Evidence map›Paper›PMID 23323207›Full record

ArticleScientific reports2013

The open gate structure of the membrane-embedded KcsA potassium channel viewed from the cytoplasmic side.

Ayumi Sumino, Takashi Sumikama, Masayuki Iwamoto, Takehisa Dewa, Shigetoshi Oiki

Abstract read
In one paragraph

Article in Scientific reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Mechanisms underlying drug-mediated regulation of membrane protein function.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Conductance selectivity of NaProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Queueing arrival and release mechanism for KThe journal of physiological sciences : JPS · 2019
    Article
  7. Constitutive boost of a KProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ayumi SuminoDepartment of Frontier Materials, Graduate School of Engineering, Nagoya Institute of Technology, Nagoya, Japan.
Takashi Sumikama
Masayuki Iwamoto
Takehisa Dewa
Shigetoshi Oiki

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crystallographic studies of channel proteins have provided insight into the molecular mechanisms of ion channels, even though these structures are obtained in the absence of the membrane and some structural portions have remained unsolved. Here we report the gating structure of the membrane-embedded KcsA potassium channel using atomic force microscopy (AFM). The activation gate of the KcsA channel is located on the intracellular side, and the cytoplasmic domain was truncated to clear the view of this location. Once opened, the individual subunits in the tetramer were resolved with the pore open at the center. Furthermore, AFM was able to capture the previously unsolved bulge helix at the entrance. A molecular dynamics simulation revealed that the bulge helices fluctuated dramatically at the open entryway. This dynamic behavior was observed as vigorous open-channel noise in the single-channel current recordings. The role of the bulge helices in the open gate structure is discussed.

Indexed as

Bacterial ProteinsCytoplasmIon Channel GatingMicroscopy, Atomic ForceMolecular Dynamics SimulationPotassium ChannelsProtein Structure, TertiaryStreptomyces lividansBacterial ProteinsPotassium Channels

Identifiers

PMID23323207
PMCPMC3545221

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.