ArticleGenome biology2013
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline.
Article in Genome biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
99 citing papers in PubMed.
- Trial
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- Review
- A Vision for VenomsBase: An Integrated Knowledgebase for the Study of Venoms and Their Applications.Integrative organismal biology (Oxford, England) · 2025Article
- Targeted protein evolution in the gut microbiome by diversity-generating retroelements.bioRxiv : the preprint server for biology · 2024Article
- Long-Term Cellulose Enrichment Selects for Highly Cellulolytic Consortia and Competition for Public Goods.mSystems · 2022Article
- Music of metagenomics-a review of its applications, analysis pipeline, and associated tools.Functional & integrative genomics · 2022Review
- It takes guts to learn: machine learning techniques for disease detection from the gut microbiome.Emerging topics in life sciences · 2021Review
- Genome-resolved metagenomics using environmental and clinical samples.Briefings in bioinformatics · 2021Review
- NFnetFu: A novel workflow for microbiome data fusion.Computers in biology and medicine · 2021Article
- Multi-omics data integration considerations and study design for biological systems and disease.Molecular omics · 2021Review
- Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions.Frontiers in microbiology · 2021Article
- Tapping the Role of Microbial Biosurfactants in Pesticide Remediation: An Eco-Friendly Approach for Environmental Sustainability.Frontiers in microbiology · 2021Review
- Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies.Frontiers in genetics · 2021Article
- Metagenomic Data Assembly - The Way of Decoding Unknown Microorganisms.Frontiers in microbiology · 2021Review
- Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community.Microorganisms · 2020Article
- Metagenomic approaches in microbial ecology: an update on whole-genome and marker gene sequencing analyses.Microbial genomics · 2020Review
- Microbial dysbiosis and polyamine metabolism as predictive markers for early detection of pancreatic cancer.Carcinogenesis · 2020Article
- Type 2 diabetes induced microbiome dysbiosis is associated with therapy resistance in pancreatic adenocarcinoma.Microbial cell factories · 2020Article
39 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
9 authors.
Funding
Abstract
We describe MetAMOS, an open source and modular metagenomic assembly and analysis pipeline. MetAMOS represents an important step towards fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations. MetAMOS can aid in reducing assembly errors, commonly encountered when assembling metagenomic samples, and improves taxonomic assignment accuracy while also reducing computational cost. MetAMOS can be downloaded from: https://github.com/treangen/MetAMOS.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.