Evidence map›Paper›PMID 23320094›Full record

ArticlePloS one2013

Plant coilin: structural characteristics and RNA-binding properties.

Valentine Makarov, Daria Rakitina, Anna Protopopova, Igor Yaminsky, Alexander Arutiunian, Andrew J Love, Michael Taliansky, Natalia Kalinina

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Coilin and Cajal bodies.Nucleus (Austin, Tex.) · 2023
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. BioMed research international · 2020
    Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Intrinsically disordered proteins in the nucleus of human cells.Biochemistry and biophysics reports · 2015
    Article
  19. Coilin: The first 25 years.RNA biology · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Valentine MakarovA. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia.
Daria Rakitina
Anna Protopopova
Igor Yaminsky
Alexander Arutiunian
Andrew J Love
Michael Taliansky
Natalia Kalinina
Lomonosov Moscow State University · RUJames Hutton Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cajal bodies (CBs) are dynamic subnuclear compartments involved in the biogenesis of ribonucleoproteins. Coilin is a major structural scaffolding protein necessary for CB formation, composition and activity. The predicted secondary structure of Arabidopsis thaliana coilin (Atcoilin) suggests that the protein is composed of three main domains. Analysis of the physical properties of deletion mutants indicates that Atcoilin might consist of an N-terminal globular domain, a central highly disordered domain and a C-terminal domain containing a presumable Tudor-like structure adjacent to a disordered C terminus. Despite the low homology in amino acid sequences, a similar type of domain organization is likely shared by human and animal coilin proteins and coilin-like proteins of various plant species. Atcoilin is able to bind RNA effectively and in a non-specific manner. This activity is provided by three RNA-binding sites: two sets of basic amino acids in the N-terminal domain and one set in the central domain. Interaction with RNA induces the multimerization of the Atcoilin molecule, a consequence of the structural alterations in the N-terminal domain. The interaction with RNA and subsequent multimerization may facilitate coilin's function as a scaffolding protein. A model of the N-terminal domain is also proposed.

Indexed as

Amino Acid SequenceAnimalsArabidopsisArabidopsis ProteinsBinding SitesHumansModels, MolecularNuclear ProteinsProtein BindingProtein MultimerizationProtein Structure, TertiaryRNA-Binding ProteinsRNA, PlantArabidopsis ProteinsAtcoilin protein, ArabidopsisNuclear Proteinsp80-coilinRNA-Binding ProteinsRNA, Plant

Identifiers

PMID23320094
PMCPMC3539977
OpenAlexW2079657306

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.