Evidence map›Paper›PMID 23319629›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Aire's plant homeodomain(PHD)-2 is critical for induction of immunological tolerance.

Siyoung Yang, Kushagra Bansal, Jared Lopes, Christophe Benoist, Diane Mathis

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 40 citations in OpenAlex.

  1. A novel heterozygous pathogenicJournal of human immunity · 2025
    Article
  2. Aire Mutations and Autoimmune Diseases.Advances in experimental medicine and biology · 2025
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. A novel AIRE mutation leads to autoimmune polyendocrine syndrome type-1.Frontiers in cell and developmental biology · 2022
    Article
  9. Article
  10. Aire regulates chromatin looping by evicting CTCF from domain boundaries and favoring accumulation of cohesin on superenhancers.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  11. Article
  12. Review
  13. Article
  14. Twenty Years of AIRE.Frontiers in immunology · 2018
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. An RNAi screen for Aire cofactors reveals a role for Hnrnpl in polymerase release and Aire-activated ectopic transcription.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Siyoung YangDivision of Immunology, Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA.
Kushagra Bansal
Jared Lopes
Christophe Benoist
Diane Mathis
Harvard University · US

Funding

The molecular mechanism of Aire: partnering with DNA-PKR01AI088204 · NIAID · HARVARD MEDICAL SCHOOL · PI DIANE J MATHIS · 2011 to 2026
$5.7M
NIAID NIH HHS AI088204NIAID NIH HHS R01 AI088204
6 · The paper itself

Abstract

Aire impacts immunological tolerance by regulating the expression of a large set of genes in thymic medullary epithelial cells, thereby controlling the repertoire of self-antigens encountered by differentiating thymocytes. Both humans and mice lacking Aire develop multiorgan autoimmunity. Currently, there are few molecular details on how Aire performs this crucial function. The more amino-terminal of its two plant homeodomains (PHDs), PHD1, helps Aire target poorly transcribed loci by "reading" the methylation status of a particular lysine residue of histone-3, a process that does not depend on the more carboxyl-terminal PHD-2. This study addresses the role of PHD2 in Aire function by comparing the behavior of wild-type and PHD2-deleted Aire in both transfected cells and transgenic mice. PHD2 was required for Aire to interact with sets of protein partners involved in chromatin structure/binding or transcription but not with those implicated in pre-mRNA processing; it also was not required for Aire's nuclear translocation or regional distribution. PHD2 strongly influenced the ability of Aire to regulate the medullary epithelial cell transcriptome and so was crucial for effective central tolerance induction. Thus, Aire's two PHDs seem to play distinct roles in the scenario by which it assures immunological tolerance.

Indexed as

AIRE ProteinAnimalsBinding SitesCells, CulturedEpithelial CellsFemaleHEK293 CellsHumansImmune ToleranceImmunoblottingMaleMiceMice, Inbred NODMice, KnockoutMice, TransgenicMicroscopy, ConfocalAIRE ProteinTranscription Factors

Identifiers

PMID23319629
PMCPMC3562810
OpenAlexW2036131760

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.