Evidence map›Paper›PMID 23319589›Full record

ArticleThe Journal of biological chemistry2013

Structural determinants of skeletal muscle ryanodine receptor gating.

Srinivas Ramachandran, Asima Chakraborty, Le Xu, Yingwu Mei, Montserrat Samsó, Nikolay V Dokholyan, Gerhard Meissner

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. CaThe Journal of biological chemistry · 2018
    Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. A guide to the 3D structure of the ryanodine receptor type 1 by cryoEM.Protein science : a publication of the Protein Society · 2017
    Review
  12. Article
  13. Article
  14. Structures of the colossal RyR1 calcium release channel.Current opinion in structural biology · 2016
    Review
  15. Article
  16. Article
  17. Arrhythmogenesis in a catecholaminergic polymorphic ventricular tachycardia mutation that depresses ryanodine receptor function.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Srinivas RamachandranDepartment of Biochemistry and Biophysics, School of Medicine, University of North Carolina, Chapel Hill, North Carolina 27599-7260, USA.
Asima Chakraborty
Le Xu
Yingwu Mei
Montserrat Samsó
Nikolay V Dokholyan
Gerhard Meissner

Funding

SARCOPLASMIC RETICULUM FUNCTION AND REASSEMBLYR01AR018687 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MEISSNER, GERHARD W · 1986 to 2009
$3.9M
SARCOPLASMIC RETICULUM FUNCTION AND REASSEMBLYR37AR018687 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MEISSNER, GERHARD W · 1990 to 2019
$3.8M
NIAMS NIH HHS AR018687NIAMS NIH HHS R01 AR018687NIAMS NIH HHS R37 AR018687
6 · The paper itself

Abstract

Ryanodine receptor type 1 (RyR1) releases Ca(2+) from intracellular stores upon nerve impulse to trigger skeletal muscle contraction. Effector binding at the cytoplasmic domain tightly controls gating of the pore domain of RyR1 to release Ca(2+). However, the molecular mechanism that links effector binding to channel gating is unknown due to lack of structural data. Here, we used a combination of computational and electrophysiological methods and cryo-EM densities to generate structural models of the open and closed states of RyR1. Using our structural models, we identified an interface between the pore-lining helix (Tyr-4912-Glu-4948) and a linker helix (Val-4830-Val-4841) that lies parallel to the cytoplasmic membrane leaflet. To test the hypothesis that this interface controls RyR1 gating, we designed mutations in the linker helix to stabilize either the open (V4830W and T4840W) or closed (H4832W and G4834W) state and validated them using single channel experiments. To further confirm this interface, we designed mutations in the pore-lining helix to stabilize the closed state (Q4947N, Q4947T, and Q4947S), which we also validated using single channel experiments. The channel conductance and selectivity of the mutations that we designed in the linker and pore-lining helices were indistinguishable from those of WT RyR1, demonstrating our ability to modulate RyR1 gating without affecting ion permeation. Our integrated computational and experimental approach significantly advances the understanding of the structure and function of an unusually large ion channel.

Indexed as

Ion Channel GatingModels, MolecularAmino Acid SubstitutionAnimalsHEK293 CellsHumansMuscle, SkeletalMutation, MissenseProtein Structure, TertiaryRabbitsRyanodine Receptor Calcium Release ChannelRyanodine Receptor Calcium Release Channel

Identifiers

PMID23319589
PMCPMC3585052

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.