Evidence map›Paper›PMID 23318056›Full record

ArticleCell stem cell2013

Dynamic chromatin remodeling mediated by polycomb proteins orchestrates pancreatic differentiation of human embryonic stem cells.

Ruiyu Xie, Logan J Everett, Hee-Woong Lim, Nisha A Patel, Jonathan Schug, Evert Kroon, Olivia G Kelly, Allen Wang, Kevin A D'Amour, Allan J Robins and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell stem cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 146 papers.

0numbers the graph read from it
0cells of the map it votes in
146citing papers in PubMed
29.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

146 citing papers in PubMed, 236 citations in OpenAlex.

  1. The metabolic road from α-cells to β-cells.Nature chemical biology · 2026
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86 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Ruiyu XieDepartment of Pediatrics and Cellular & Molecular Medicine, University of California San Diego, La Jolla, CA 92093-0695, USA.
Logan J Everett
Hee-Woong Lim
Nisha A Patel
Jonathan Schug
Evert Kroon
Olivia G Kelly
Allen Wang
Kevin A D'Amour
Allan J Robins
Kyoung-Jae Won
Klaus H Kaestner
Maike Sander
University of Pennsylvania · USUniversity of California San Diego · USViaCyte (United States) · US

Funding

VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MITCHELL A. LAZAR · 1986 to 2026
$48.3M
Regulation and function of the MEG3 locus in human beta-cellsR01DK088383 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KAESTNER, KLAUS H · 2010 to 2018
$4.8M
Epigenetic strategies for the in vitro generation of replacement beta cellsU01DK089567 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SANDER, MAIKE · 2010 to 2013
$4.7M
Novel insights into nutrient-dependent regulation of beta cell proliferationR01DK078803 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SANDER, MAIKE · 2007 to 2022
$4.4M
Epigenomics of the regenerating and aging beta-cellU01DK089529 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KAESTNER, KLAUS H · 2010 to 2013
$1.8M
NIDDK NIH HHS P30 DK019525NIDDK NIH HHS P30-DK19525NIDDK NIH HHS R01-DK07243NIDDK NIH HHS R01 DK078803NIDDK NIH HHS R01 DK088383NIDDK NIH HHS R01-DK088383NIDDK NIH HHS U01 DK089529NIDDK NIH HHS U01-DK089529NIDDK NIH HHS U01 DK089567NIDDK NIH HHS U01-DK089567
6 · The paper itself

Abstract

Embryonic development is characterized by dynamic changes in gene expression, yet the role of chromatin remodeling in these cellular transitions remains elusive. To address this question, we profiled the transcriptome and select chromatin modifications at defined stages during pancreatic endocrine differentiation of human embryonic stem cells. We identify removal of Polycomb group (PcG)-mediated repression on stage-specific genes as a key mechanism for the induction of developmental regulators. Furthermore, we discover that silencing of transitory genes during lineage progression associates with reinstatement of PcG-dependent repression. Significantly, in vivo- but not in vitro-differentiated endocrine cells exhibit close similarity to primary human islets in regard to transcriptome and chromatin structure. We further demonstrate that endocrine cells produced in vitro do not fully eliminate PcG-mediated repression on endocrine-specific genes, probably contributing to their malfunction. These studies reveal dynamic chromatin remodeling during developmental lineage progression and identify possible strategies for improving cell differentiation in culture.

Indexed as

AnimalsCell DifferentiationChromatin Assembly and DisassemblyEmbryonic Stem CellsEndocrine CellsEndodermHumansMicePancreasPolycomb-Group ProteinsPolycomb-Group Proteins

Identifiers

PMID23318056
PMCPMC3619036
OpenAlexW2116429223

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.