Evidence map›Paper›PMID 23317809›Full record

ArticleInternational journal of medical informatics2014

Automatic identification of heart failure diagnostic criteria, using text analysis of clinical notes from electronic health records.

Roy J Byrd, Steven R Steinhubl, Jimeng Sun, Shahram Ebadollahi, Walter F Stewart

Open access · greenAbstract read
In one paragraph

Article in International journal of medical informatics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 4 pooled it
14.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 4 syntheses or guidelines pooled it, 133 citations in OpenAlex.

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  13. Combining text mining with clinical decision support in clinical practice: a scoping review.Journal of the American Medical Informatics Association : JAMIA · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Roy J ByrdIBM T. J. Watson Research Center, Yorktown Heights, NY, United States. Electronic address: roybyrd@us.ibm.com.
Steven R SteinhublGeisinger Medical Center, Center for Health Research, Danville, PA, United States.
Jimeng SunIBM T. J. Watson Research Center, Yorktown Heights, NY, United States.
Shahram EbadollahiIBM T. J. Watson Research Center, Yorktown Heights, NY, United States.
Walter F StewartSutter Health, Research, Development, & Dissemination, Concord, CA, United States.
IBM Research - Thomas J. Watson Research Center · USGeisinger Medical Center · USSutter Health · US

Funding

Early Detection of Heart Failure via the Electronic Health Record in Primary CareR01HL116832 · NHLBI · CALIFORNIA PACIFIC MED CTR RES INSTITUTE · PI STEWART, WALTER F · 2013 to 2015
$1.5M
NHLBI NIH HHS R01 HL116832
6 · The paper itself

Abstract

objectiveEarly detection of Heart Failure (HF) could mitigate the enormous individual and societal burden from this disease. Clinical detection is based, in part, on recognition of the multiple signs and symptoms comprising the Framingham HF diagnostic criteria that are typically documented, but not necessarily synthesized, by primary care physicians well before more specific diagnostic studies are done. We developed a natural language processing (NLP) procedure to identify Framingham HF signs and symptoms among primary care patients, using electronic health record (EHR) clinical notes, as a prelude to pattern analysis and clinical decision support for early detection of HF.

designWe developed a hybrid NLP pipeline that performs two levels of analysis: (1) At the criteria mention level, a rule-based NLP system is constructed to annotate all affirmative and negative mentions of Framingham criteria. (2) At the encounter level, we construct a system to label encounters according to whether any Framingham criterion is asserted, denied, or unknown. MEASUREMENTS: Precision, recall, and F-score are used as performance metrics for criteria mention extraction and for encounter labeling.

resultsOur criteria mention extractions achieve a precision of 0.925, a recall of 0.896, and an F-score of 0.910. Encounter labeling achieves an F-score of 0.932.

conclusionOur system accurately identifies and labels affirmations and denials of Framingham diagnostic criteria in primary care clinical notes and may help in the attempt to improve the early detection of HF. With adaptation and tooling, our development methodology can be repeated in new problem settings.

Indexed as

Electronic Data ProcessingNatural Language ProcessingPopulation SurveillanceCohort StudiesData MiningElectronic Health RecordsHeart FailureHumansPrimary Health CareDiagnostic criteriaElectronic health recordsHeart failureNatural language processingText mining

Identifiers

PMID23317809
PMCPMC5234735
OpenAlexW2041789624

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.