Evidence map›Paper›PMID 23314690›Full record

ArticleEpigenetics2013

Hypoxia alters the epigenetic profile in cultured human placental trophoblasts.

Ryan K C Yuen, Baosheng Chen, John D Blair, Wendy P Robinson, D Michael Nelson

Open access · hybridAbstract read
In one paragraph

Article in Epigenetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 3 pooled it
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 3 syntheses or guidelines pooled it, 84 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Trophoblast adaptation to hypoxia: balance and dysfunction.Cell communication and signaling : CCS · 2025
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. The Impact of Hypoxia in Early Pregnancy on Placental Cells.International journal of molecular sciences · 2021
    Review
  11. Article
  12. Article
  13. The role of N-cadherin/c-Jun/NDRG1 axis in the progression of prostate cancer.International journal of biological sciences · 2021
    Article
  14. Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ryan K C YuenDepartment of Medical Genetics, University of British Columbia, Vancouver, BC, Canada.
Baosheng Chen
John D Blair
Wendy P Robinson
D Michael Nelson
Child and Family Research Institute · CAUniversity of Missouri–St. Louis · USHospital for Sick Children · CA

Funding

PLACENTAL TROPHOBLAST, EICOSANOIDS, AND PREECLAMPSIAR01HD029190 · NICHD · WASHINGTON UNIVERSITY · PI NELSON, DONALD MICHAEL · 1994 to 2011
$2.3M
CIHRNICHD NIH HHS HD 29190NICHD NIH HHS R01 HD029190
6 · The paper itself

Abstract

The mechanisms by which the placenta adapts to exogenous stimuli to create a stable and healthy environment for the growing fetus are not well known. Low oxygen tension influences placental function, and is associated with preeclampsia, a condition displaying altered development of placental trophoblast. We hypothesized that oxygen tension affects villous trophoblast by modulation of gene expression through DNA methylation. We used the Infinium HumanMethylation450 BeadChip array to compare the DNA methylation profile of primary cultures of human cytotrophoblasts and syncytiotrophoblasts under < 1%, 8% and 20% oxygen levels. We found no effect of oxygen tension on average DNA methylation for either cell phenotype, but a set of loci became hypermethylated in cytotrophoblasts exposed for 24 h to < 1% oxygen, as compared with those exposed to 8% or 20% oxygen. Hypermethylation with low oxygen tension was independently confirmed by bisulfite-pyrosequencing in a subset of functionally relevant genes including CD59, CFB, GRAM3 and ZNF217. Intriguingly, 70 out of the 147 CpGs that became hypermethylated in < 1% oxygen overlapped with CpG sites that became hypomethylated upon differentiation of cytotrophoblasts into syncytiotrophoblasts. Furthermore, the preponderance of altered sites was located at AP-1 binding sites. We suggest that AP-1 expression is triggered by hypoxia and interacts with DNA methyltransferases (DNMTs) to target methylation at specific sites in the genome, thus causing suppression of the associated genes that are responsible for differentiation of villous cytotrophoblast to syncytiotrophoblast.

Indexed as

DNA MethylationEpigenesis, GeneticBinding SitesCD59 AntigensCell DifferentiationCells, CulturedCpG IslandsFemaleGene ExpressionHumansHypoxiaOxygenPre-EclampsiaPregnancyReverse Transcriptase Polymerase Chain ReactionTrans-ActivatorsCD59 AntigensCD59 protein, humanOxygenTrans-ActivatorsTranscription Factor AP-1ZNF217 protein, humanAP-1DNA methylationhypoxiaplacentapreeclampsia

Identifiers

PMID23314690
PMCPMC3592905
OpenAlexW2122660766

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.