Evidence map›Paper›PMID 23314347›Full record

ArticleProtein expression and purification2013

Bacterial expression and purification of the amyloidogenic peptide PAPf39 for multidimensional NMR spectroscopy.

Aranganathan Shanmuganathan, Anthony C Bishop, Kinsley C French, Scott A McCallum, George I Makhatadze

Open access · greenAbstract read
In one paragraph

Article in Protein expression and purification, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Aranganathan ShanmuganathanCenter for Biotechnology and Interdisciplinary Studies and Department of Biology, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Anthony C Bishop
Kinsley C French
Scott A McCallum
George I Makhatadze
Rensselaer Polytechnic Institute · US

Funding

Computational and Experimental Studies of the Amyloid Fibril Formation by PAPf39R21GM101134 · NIGMS · RENSSELAER POLYTECHNIC INSTITUTE · PI MAKHATADZE, GEORGE I · 2012 to 2013
$418k
NIGMS NIH HHS 1R21GM101134NIGMS NIH HHS R21 GM101134
6 · The paper itself

Abstract

PAPf39 is a 39 residue peptide fragment from human prostatic acidic phosphatase that forms amyloid fibrils in semen. These fibrils have been implicated in facilitating HIV transmission. To enable structural studies of PAPf39 by NMR spectroscopy, efficient methods allowing the production of milligram quantities of isotopically labeled peptide are essential. Here, we report the high-yield expression and purification of uniformly (13)C- and (15)N-labeled PAPf39 peptide, through expression as a fusion to ubiquitin at the N-terminus and an intein at the C-terminus. This allows the study of the PAPf39 monomer conformational ensemble by NMR spectroscopy. To this end, we performed the NMR chemical shift assignment of the PAPf39 peptide in the monomeric state at low pH.

Indexed as

Amino Acid SequenceAmyloidEscherichia coliHumansInteinsMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularPeptide FragmentsProtein ConformationProtein Tyrosine PhosphatasesRecombinant Fusion ProteinsUbiquitinAmyloidPeptide Fragmentsprostatic acid phosphatase (248-286), humanProtein Tyrosine PhosphatasesRecombinant Fusion ProteinsUbiquitin

Identifiers

PMID23314347
PMCPMC3594438
OpenAlexW2116911023

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.