Evidence map›Paper›PMID 23314171›Full record

ArticleNature methods2013

An optimized fluorescent probe for visualizing glutamate neurotransmission.

Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann and 6 more

Abstract read
In one paragraph

Article in Nature methods, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 566 papers.

0numbers the graph read from it
0cells of the map it votes in
566citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

566 citing papers in PubMed.

  1. Article
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  16. Review
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506 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Jonathan S MarvinHoward Hughes Medical Institute (HHMI), Janelia Farm Research Campus, Ashburn, Virginia, USA.
Bart G Borghuis
Lin Tian
Joseph Cichon
Mark T Harnett
Jasper Akerboom
Andrew Gordus
Sabine L Renninger
Tsai-Wen Chen
Cornelia I Bargmann
Michael B Orger
Eric R Schreiter
Jonathan B Demb
Wen-Biao Gan
S Andrew Hires
Loren L Looger

Funding

MEDICAL SCIENTIST TRAININGT32GM007308 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PHILIPS, MARK REID · 1985 to 2019
$23.2M
Experience-dependent plasticity of synaptic structure.-Resubmission-1R01NS047325 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CHAO, MOSES VICTOR · 2004 to 2019
$6.2M
Howard Hughes Medical InstituteNIGMS NIH HHS T32 GM007308NINDS NIH HHS R01 NS047325
6 · The paper itself

Abstract

We describe an intensity-based glutamate-sensing fluorescent reporter (iGluSnFR) with signal-to-noise ratio and kinetics appropriate for in vivo imaging. We engineered iGluSnFR in vitro to maximize its fluorescence change, and we validated its utility for visualizing glutamate release by neurons and astrocytes in increasingly intact neurological systems. In hippocampal culture, iGluSnFR detected single field stimulus-evoked glutamate release events. In pyramidal neurons in acute brain slices, glutamate uncaging at single spines showed that iGluSnFR responds robustly and specifically to glutamate in situ, and responses correlate with voltage changes. In mouse retina, iGluSnFR-expressing neurons showed intact light-evoked excitatory currents, and the sensor revealed tonic glutamate signaling in response to light stimuli. In worms, glutamate signals preceded and predicted postsynaptic calcium transients. In zebrafish, iGluSnFR revealed spatial organization of direction-selective synaptic activity in the optic tectum. Finally, in mouse forelimb motor cortex, iGluSnFR expression in layer V pyramidal neurons revealed task-dependent single-spine activity during running.

Indexed as

Escherichia coli ProteinsFluorescent DyesGreen Fluorescent ProteinsRecombinant Fusion ProteinsAnimalsAstrocytesBiosensing TechniquesCaenorhabditis elegansCalcium SignalingExcitatory Postsynaptic PotentialsGlutamic AcidHippocampusMiceMotor CortexNeuronsPhotic StimulationEscherichia coli ProteinsFluorescent DyesGlutamic AcidGreen Fluorescent ProteinsiGluSnFR proteinRecombinant Fusion Proteins

Identifiers

PMID23314171
PMCPMC4469972

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.