Evidence map›Paper›PMID 23314154›Full record

ArticleNucleic acids research2013

Mycobacterium tuberculosis RsdA provides a conformational rationale for selective regulation of σ-factor activity by proteolysis.

Ravi K Jaiswal, Tangirala Surya Prabha, Gowravaram Manjeera, Balasubramanian Gopal

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Control of Toxin-Antitoxin Systems by Proteases inFrontiers in molecular biosciences · 2021
    Review
  3. Selectivity among Anti-σ Factors byJournal of bacteriology · 2019
    Article
  4. Article
  5. Article
  6. Crystallographic studies of the extracytoplasmic function σ factor σ(J) from Mycobacterium tuberculosis.Acta crystallographica. Section F, Structural biology communications · 2015
    Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ravi K JaiswalMolecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Tangirala Surya Prabha
Gowravaram Manjeera
Balasubramanian Gopal
Indian Institute of Science Bangalore · IN

Funding

Wellcome Trust 078994Wellcome Trust WT078994MA
6 · The paper itself

Abstract

The relative levels of different σ factors dictate the expression profile of a bacterium. Extracytoplasmic function σ factors synchronize the transcriptional profile with environmental conditions. The cellular concentration of free extracytoplasmic function σ factors is regulated by the localization of this protein in a σ/anti-σ complex. Anti-σ factors are multi-domain proteins with a receptor to sense environmental stimuli and a conserved anti-σ domain (ASD) that binds a σ factor. Here we describe the structure of Mycobacterium tuberculosis anti-σ(D) (RsdA) in complex with the -35 promoter binding domain of σ(D) (σ(D)4). We note distinct conformational features that enable the release of σ(D) by the selective proteolysis of the ASD in RsdA. The structural and biochemical features of the σ(D)/RsdA complex provide a basis to reconcile diverse regulatory mechanisms that govern σ/anti-σ interactions despite high overall structural similarity. Multiple regulatory mechanisms embedded in an ASD scaffold thus provide an elegant route to rapidly re-engineer the expression profile of a bacterium in response to an environmental stimulus.

Indexed as

Mycobacterium tuberculosisAmino Acid SequenceBacterial ProteinsBinding SitesCrystallography, X-RayDNA, BacterialMolecular Dynamics SimulationMolecular Sequence DataPromoter Regions, GeneticProteasome Endopeptidase ComplexProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryProteolysisSigma FactorBacterial ProteinsDNA, BacterialProteasome Endopeptidase ComplexSigma Factor

Identifiers

PMID23314154
PMCPMC3597663
OpenAlexW2025246489

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.