Evidence map›Paper›PMID 23307121›Full record

ArticleAnalytical and bioanalytical chemistry2013

Rapid extraction and preservation of genomic DNA from human samples.

D Kalyanasundaram, J-H Kim, W-H Yeo, K Oh, K-H Lee, M-H Kim, S-M Ryew, S-G Ahn, D Gao, G A Cangelosi and 1 more

Abstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. USNCTAM perspectives on mechanics in medicine.Journal of the Royal Society, Interface · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

D KalyanasundaramDepartment of Mechanical Engineering, University of Washington, Seattle, WA 98195, USA.
J-H Kim
W-H Yeo
K Oh
K-H Lee
M-H Kim
S-M Ryew
S-G Ahn
D Gao
G A Cangelosi
J-H Chung
Seattle University · USBellevue Hospital Center · USKangnam University · KRUniversity of Washington · US

Funding

Microscale Tip Device for Rapid Concentration and Storage of PCR-ready DNA from BR43GM099347 · NIGMS · NANOFACTURE, INC. · PI CHUNG, JAE-HYUN, LEE, KYONG-HOON · 2012 to 2012
$150k
NIGMS NIH HHS 1R43GM099347NIGMS NIH HHS R43 GM099347
6 · The paper itself

Abstract

Simple and rapid extraction of human genomic DNA remains a bottleneck for genome analysis and disease diagnosis. Current methods using microfilters require cumbersome, multiple handling steps in part because salt conditions must be controlled for attraction and elution of DNA in porous silica. We report a novel extraction method of human genomic DNA from buccal swab and saliva samples. DNA is attracted onto a gold-coated microchip by an electric field and capillary action while the captured DNA is eluted by thermal heating at 70 °C. A prototype device was designed to handle four microchips, and a compatible protocol was developed. The extracted DNA using microchips was characterized by qPCR for different sample volumes, using different lengths of PCR amplicon, and nuclear and mitochondrial genes. In comparison with a commercial kit, an equivalent yield of DNA extraction was achieved with fewer steps. Room-temperature preservation for 1 month was demonstrated for captured DNA, facilitating straightforward collection, delivery, and handling of genomic DNA in an environment-friendly protocol.

Indexed as

Cell NucleusDNADNA, MitochondrialElectrochemical TechniquesGoldHumansMicrochip Analytical ProceduresMouth MucosaNucleic Acid DenaturationOligonucleotide Array Sequence AnalysisPolymerase Chain ReactionPreservation, BiologicalSalivaSpecimen HandlingDNADNA, MitochondrialGold

Identifiers

PMID23307121
PMCPMC3566295
OpenAlexW2168953997

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.