Evidence map›Paper›PMID 23306079›Full record

ReviewAdvances in biological regulation2013

The novel poly(A) polymerase Star-PAP is a signal-regulated switch at the 3'-end of mRNAs.

Weimin Li, Rakesh S Laishram, Richard A Anderson

Open access · greenAbstract readReview
In one paragraph

Review in Advances in biological regulation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. When PIPFrontiers in cell and developmental biology · 2022
    Review
  7. Article
  8. Review
  9. Article
  10. Nuclear Phosphoinositides: Their Regulation and Roles in Nuclear Functions.International journal of molecular sciences · 2019
    Review
  11. Phosphatidylinositol Kinases and Phosphatases inFrontiers in cellular and infection microbiology · 2019
    Review
  12. Terminal nucleotidyl transferases (TENTs) in mammalian RNA metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Weimin LiUniversity of Wisconsin-Madison, School of Medicine and Public Health, Medical Sciences Center, 1300 University Ave., Madison, WI 53706, USA.
Rakesh S Laishram
Richard A Anderson
Rajiv Gandhi Centre for Biotechnology · INUniversity of Wisconsin–Madison · US

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI AMY TRENTHAM-DIETZ · 1985 to 2026
$142.6M
Training Program In Molecular AND Cellular PharmacologyT32GM008688 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI AUDHYA, ANJON · 1998 to 2020
$6.0M
PHOSPHOINOSITIDE SIGNALING TO AND WITHIN THE NUCLEUSR01GM051968 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ANDERSON, RICHARD A. · 1995 to 2012
$3.2M
Nuclear Phosphoinositide Control of 3'-end mRNA Processing and Gene ExpressionR01GM114386 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ANDERSON, RICHARD A. · 2016 to 2019
$1.5M
NCI NIH HHS P30 CA014520NIGMS NIH HHS R01 GM051968NIGMS NIH HHS R01 GM114386NIGMS NIH HHS T32 GM008688Wellcome Trust
6 · The paper itself

Abstract

The mRNA 3'-untranslated region (3'-UTR) modulates message stability, transport, intracellular location and translation. We have discovered a novel nuclear poly(A) polymerase termed Star-PAP (nuclear speckle targeted PIPKIα regulated-poly(A) polymerase) that couples with the transcriptional machinery and is regulated by the phosphoinositide lipid messenger phosphatidylinositol-4,5-bisphosphate (PI4,5P(2)), the central lipid in phosphoinositide signaling. PI4,5P(2) is generated primarily by type I phosphatidylinositol phosphate kinases (PIPKI). Phosphoinositides are present in the nucleus including at nuclear speckles compartments separate from known membrane structures. PIPKs regulate cellular functions by interacting with PI4,5P(2) effectors where PIPKs generate PI4,5P(2) that then modulates the activity of the associated effectors. Nuclear PIPKIα interacts with and regulates Star-PAP, and PI4,5P(2) specifically activates Star-PAP in a gene- and signaling-dependent manner. Importantly, other select signaling molecules integrated into the Star-PAP complex seem to regulate Star-PAP activities and processivities toward RNA substrates, and unique sequence elements around the Star-PAP binding sites within the 3'-UTR of target genes contribute to Star-PAP specificity for processing. Therefore, Star-PAP and its regulatory molecules form a signaling nexus at the 3'-end of target mRNAs to control the expression of select group of genes including the ones involved in stress responses.

Indexed as

3' Untranslated RegionsCell NucleusGene Expression RegulationHumansIsoenzymesNucleotidyltransferasesPhosphatidylinositol 4,5-DiphosphatePhosphotransferases (Alcohol Group Acceptor)Polynucleotide AdenylyltransferaseRNA StabilitySignal TransductionStress, Physiological3' Untranslated RegionsIsoenzymesNucleotidyltransferasesPhosphatidylinositol 4,5-DiphosphatePhosphotransferases (Alcohol Group Acceptor)Polynucleotide AdenylyltransferaseTUT1 protein, human

Identifiers

PMID23306079
PMCPMC3626085
OpenAlexW1974303763

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.