ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2012
Deriving an abstraction network to support quality assurance in OCRe.
Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
What it found
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Who cites it
11 citing papers in PubMed.
- Visual comprehension and orientation into the COVID-19 CIDO ontology.Journal of biomedical informatics · 2021Article
- Extending import detection algorithms for concept import from two to three biomedical terminologies.BMC medical informatics and decision making · 2020Article
- Assessing the practice of biomedical ontology evaluation: Gaps and opportunities.Journal of biomedical informatics · 2018Review
- Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology.Journal of biomedical informatics · 2017Article
- Introducing the Big Knowledge to Use (BK2U) challenge.Annals of the New York Academy of Sciences · 2017Review
- A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies.Journal of biomedical informatics · 2016Article
- Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies.Journal of biomedical informatics · 2016Article
- Modelling Medications for Public Health Research.Online journal of public health informatics · 2016Article
- Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network.Journal of biomedical informatics · 2015Article
- Abstraction networks for terminologies: Supporting management of "big knowledge".Artificial intelligence in medicine · 2015Review
- A family-based framework for supporting quality assurance of biomedical ontologies in BioPortal.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2013Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
An abstraction network is an auxiliary network of nodes and links that provides a compact, high-level view of an ontology. Such a view lends support to ontology orientation, comprehension, and quality-assurance efforts. A methodology is presented for deriving a kind of abstraction network, called a partial-area taxonomy, for the Ontology of Clinical Research (OCRe). OCRe was selected as a representative of ontologies implemented using the Web Ontology Language (OWL) based on shared domains. The derivation of the partial-area taxonomy for the Entity hierarchy of OCRe is described. Utilizing the visualization of the content and structure of the hierarchy provided by the taxonomy, the Entity hierarchy is audited, and several errors and inconsistencies in OCRe's modeling of its domain are exposed. After appropriate corrections are made to OCRe, a new partial-area taxonomy is derived. The generalizability of the paradigm of the derivation methodology to various families of biomedical ontologies is discussed.
Indexed as
Identifiers
23304341PMC3540580What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.