Evidence map›Paper›PMID 23303783›Full record

ArticleNucleic acids research2013

Combinatorial mRNA binding by AUF1 and Argonaute 2 controls decay of selected target mRNAs.

Xiangyue Wu, Sandra Chesoni, Gaelle Rondeau, Christi Tempesta, Reshma Patel, Sandy Charles, Naznin Daginawala, Beth E Zucconi, Aparna Kishor, Guangwu Xu and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. AUF1 regulation of coding and noncoding RNA.Wiley interdisciplinary reviews. RNA · 2017
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Translating the Untranslated Region.Journal of immunology (Baltimore, Md. : 1950) · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Xiangyue WuDepartment of Biochemistry and Molecular Biology, UMDNJ-Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA.
Sandra Chesoni
Gaelle Rondeau
Christi Tempesta
Reshma Patel
Sandy Charles
Naznin Daginawala
Beth E Zucconi
Aparna Kishor
Guangwu Xu
Yufang Shi
Mei-Ling Li
Patricia Irizarry-Barreto
John Welsh
Gerald M Wilson
Gary Brewer
University of Maryland, Baltimore · USJohnson University · USUniversity of Baltimore · US

Funding

Translational Regulation by the TNF Alpha AU-rich ElementP01AI057596 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI PESTKA, SIDNEY · 2004 to 2009
$8.8M
UMDNJ-RUTGERS UNIVERSITY PIPELINE PROGRAMR25GM055145 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI HAIMOVICH, BEATRICE, LANGER, JEROME ALAN · 1996 to 2020
$8.7M
POST TRANSCRIPTIONAL REGULATION--ONCOGENE MESSENGER RNAR01CA052443 · NCI · WAKE FOREST UNIVERSITY · PI BREWER, GARY A. · 1990 to 2012
$4.3M
Graduate Training at The Chemistry Biology InterfaceT32GM066706 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI SELEY-RADTKE, KATHERINE L, SMITH, AARON T · 2004 to 2023
$3.3M
Mechanisms directing oncoprotein and cytokine mRNA decayR01CA102428 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI WILSON, GERALD M. · 2003 to 2013
$2.8M
Vertical Coverage Arrays in analyzing transcriptionR33CA091358 · NCI · SIDNEY KIMMEL CANCER CENTER · PI WELSH, JOHN T · 2003 to 2004
$685k
Mechanisms directing oncoprotein and cytokine mRNA decayR56CA102428 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI WILSON, GERALD M. · 2008 to 2008
$363k
Vertical Coverage Arrays in analyzing transcriptionR21CA091358 · NCI · SIDNEY KIMMEL CANCER CENTER · PI WELSH, JOHN T · 2002 to 2002
$198k
NCI NIH HHS CA052443NCI NIH HHS CA091358NCI NIH HHS CA102428NCI NIH HHS R01 CA052443NCI NIH HHS R01 CA102428NIAID NIH HHS AI057596NIGMS NIH HHS R25 GM055145NIGMS NIH HHS T32 GM066706
6 · The paper itself

Abstract

The RNA-binding protein AUF1 binds AU-rich elements in 3'-untranslated regions to regulate mRNA degradation and/or translation. Many of these mRNAs are predicted microRNA targets as well. An emerging theme in post-transcriptional control of gene expression is that RNA-binding proteins and microRNAs co-regulate mRNAs. Recent experiments and bioinformatic analyses suggest this type of co-regulation may be widespread across the transcriptome. Here, we identified mRNA targets of AUF1 from a complex pool of cellular mRNAs and examined a subset of these mRNAs to explore the links between RNA binding and mRNA degradation for both AUF1 and Argonaute 2 (AGO2), which is an essential effector of microRNA-induced gene silencing. Depending on the specific mRNA examined, AUF1 and AGO2 binding is proportional/cooperative, reciprocal/competitive or independent. For most mRNAs in which AUF1 affects their decay rates, mRNA degradation requires AGO2. Thus, AUF1 and AGO2 present mRNA-specific allosteric binding relationships for co-regulation of mRNA degradation.

Indexed as

RNA Stability3' Untranslated RegionsArgonaute ProteinsHeLa CellsHeterogeneous-Nuclear Ribonucleoprotein DHeterogeneous Nuclear Ribonucleoprotein D0HumansK562 CellsRNA, Messenger3' Untranslated RegionsAGO2 protein, humanArgonaute ProteinsHeterogeneous-Nuclear Ribonucleoprotein DHeterogeneous Nuclear Ribonucleoprotein D0HNRNPD protein, humanRNA, Messenger

Identifiers

PMID23303783
PMCPMC3575833
OpenAlexW2133142263

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.