Evidence map›Paper›PMID 23301498›Full record

ArticleJournal of proteome research2013

Proteome wide purification and identification of O-GlcNAc-modified proteins using click chemistry and mass spectrometry.

Hannes Hahne, Nadine Sobotzki, Tamara Nyberg, Dominic Helm, Vladimir S Borodkin, Daan M F van Aalten, Brian Agnew, Bernhard Kuster

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 160 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. O-GlcNAc modulation of nuclear pore complexes orchestrates mRNA export efficiency.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  9. Tissue-specificeLife · 2024
    Article
  10. OGT and OGA: Sweet guardians of the genome.The Journal of biological chemistry · 2024
    Review
  11. Review
  12. Molecular Mechanisms Linking Diabetes with Increased Risk of Thrombosis.International journal of molecular sciences · 2023
    Review
  13. Frontiers in immunology · 2023
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. TargetingFrontiers in oncology · 2022
    Review
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Hannes HahneChair for Proteomics and Bioanalytics, Center of Life and Food Sciences, Weihenstephan, Technische Universität München, Freising, Germany.
Nadine Sobotzki
Tamara Nyberg
Dominic Helm
Vladimir S Borodkin
Daan M F van Aalten
Brian Agnew
Bernhard Kuster
Technical University of Munich · DEMRC Protein Phosphorylation and Ubiquitylation Unit · GBUniversity of Dundee · GB

Funding

Medical Research Council G0900138Wellcome Trust 087590
6 · The paper itself

Abstract

The post-translational modification of proteins with N-acetylglucosamine (O-GlcNAc) is involved in the regulation of a wide variety of cellular processes and associated with a number of chronic diseases. Despite its emerging biological significance, the systematic identification of O-GlcNAc proteins is still challenging. In the present study, we demonstrate a significantly improved O-GlcNAc protein enrichment procedure, which exploits metabolic labeling of cells by azide-modified GlcNAc and copper-mediated Click chemistry for purification of modified proteins on an alkyne-resin. On-resin proteolysis using trypsin followed by LC-MS/MS afforded the identification of around 1500 O-GlcNAc proteins from a single cell line. Subsequent elution of covalently resin bound O-GlcNAc peptides using selective β-elimination enabled the identification of 185 O-GlcNAc modification sites on 80 proteins. To demonstrate the practical utility of the developed approach, we studied the global effects of the O-GlcNAcase inhibitor GlcNAcstatin G on the level of O-GlcNAc modification of cellular proteins. About 200 proteins including several key players involved in the hexosamine signaling pathway showed significantly increased O-GlcNAcylation levels in response to the drug, which further strengthens the link of O-GlcNAc protein modification to cellular nutrient sensing and response.

Indexed as

Protein Processing, Post-TranslationalAcetylglucosamineAlkynesAzidesbeta-N-AcetylhexosaminidasesChromatography, LiquidClick ChemistryEnzyme InhibitorsHEK293 CellsHumansImmobilized ProteinsPeptide FragmentsProteomeTandem Mass SpectrometryTrypsinAcetylglucosamineAlkynesAzidesbeta-N-AcetylhexosaminidasesEnzyme Inhibitorshexosaminidase CImmobilized ProteinsPeptide FragmentsProteomeTrypsin

Identifiers

PMID23301498
PMCPMC4946622
OpenAlexW2116095417

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.