Evidence map›Paper›PMID 23301045›Full record

ArticlePloS one2013

Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparation.

Miriam V Gutschow, Jacob J Hughey, Nicholas A Ruggero, Bryce T Bajar, Sean D Valle, Markus W Covert

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  5. Review
  6. Subcellular western blotting of single cells.Microsystems & nanoengineering · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Miriam V GutschowDepartment of Bioengineering, Stanford University, Stanford, California, United States of America.
Jacob J Hughey
Nicholas A Ruggero
Bryce T Bajar
Sean D Valle
Markus W Covert

Funding

A Gene-Complete Computational Model of YeastDP1OD006413 · OD · STANFORD UNIVERSITY · PI COVERT, MARKUS W · 2009 to 2011
$2.4M
Combining Computational and Experimentation to Interrogate NF-kappaB SignalingR00CA125994 · NCI · STANFORD UNIVERSITY · PI COVERT, MARKUS W · 2009 to 2011
$740k
New methods for monitoring the immune system, in individual cells and in vivoR21AI104305 · NIAID · STANFORD UNIVERSITY · PI COVERT, MARKUS W · 2012 to 2013
$439k
Combining Computational and Experimentation to Interrogate NF-kappaB SignalingK99CA125994 · NCI · STANFORD UNIVERSITY · PI COVERT, MARKUS W · 2007 to 2008
$275k
NCI NIH HHS K99 CA125994NCI NIH HHS K99/R00 CA125994NCI NIH HHS R00 CA125994NIAID NIH HHS R21 AI104305NIH HHS DP1 OD006413NIH HHS DP1OD006413
6 · The paper itself

Abstract

backgroundLipopolysaccharide (LPS), found in the outer membrane of gram-negative bacteria, elicits a strong response from the transcription factor family Nuclear factor (NF)-κB via Toll-like receptor (TLR) 4. The cellular response to lipopolysaccharide varies depending on the source and preparation of the ligand, however. Our goal was to compare single-cell NF-κB dynamics across multiple sources and concentrations of LPS. METHODOLOGY/PRINCIPAL

findingsUsing live-cell fluorescence microscopy, we determined the NF-κB activation dynamics of hundreds of single cells expressing a p65-dsRed fusion protein. We used computational image analysis to measure the nuclear localization of the fusion protein in the cells over time. The concentration range spanned up to nine orders of magnitude for three E. coli LPS preparations. We find that the LPS preparations induce markedly different responses, even accounting for potency differences. We also find that the ability of soluble TNF receptor to affect NF-κB dynamics varies strikingly across the three preparations. CONCLUSIONS/SIGNIFICANCE: Our work strongly suggests that the cellular response to LPS is highly sensitive to the source and preparation of the ligand. We therefore caution that conclusions drawn from experiments using one preparation may not be applicable to LPS in general.

Indexed as

3T3 CellsAnimalsEscherichia coliLigandsLipopolysaccharidesMembrane GlycoproteinsMiceMicroscopy, FluorescenceNF-kappa BPromoter Regions, GeneticReceptors, Tumor Necrosis FactorSignal TransductionSingle-Cell AnalysisToll-Like Receptor 4LigandsLipopolysaccharidesMembrane GlycoproteinsNF-kappa BReceptors, Tumor Necrosis FactorTlr4 protein, mouseToll-Like Receptor 4

Identifiers

PMID23301045
PMCPMC3536753

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.