Evidence map›Paper›PMID 23300427›Full record

ArticlePLoS computational biology2012

Interconnected cavernous structure of bacterial fruiting bodies.

Cameron W Harvey, Huijing Du, Zhiliang Xu, Dale Kaiser, Igor Aranson, Mark Alber

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. How Myxobacteria Cooperate.Journal of molecular biology · 2015
    Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Cameron W HarveyDepartment of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, Indiana, United States of America.
Huijing Du
Zhiliang Xu
Dale Kaiser
Igor Aranson
Mark Alber
University of Notre Dame · USArgonne National Laboratory · USIndiana University – Purdue University Indianapolis · USStanford University · US

Funding

Study of the interplay of motility mechanisms during swaming of Myxococcus xanthuR01GM100470 · NIGMS · UNIVERSITY OF NOTRE DAME · PI ALBER, MARK · 2011 to 2013
$770k
NIGMS NIH HHS 1R01GM100470-01NIGMS NIH HHS R01 GM100470
6 · The paper itself

Abstract

The formation of spore-filled fruiting bodies by myxobacteria is a fascinating case of multicellular self-organization by bacteria. The organization of Myxococcus xanthus into fruiting bodies has long been studied not only as an important example of collective motion of bacteria, but also as a simplified model for developmental morphogenesis. Sporulation within the nascent fruiting body requires signaling between moving cells in order that the rod-shaped self-propelled cells differentiate into spores at the appropriate time. Probing the three-dimensional structure of myxobacteria fruiting bodies has previously presented a challenge due to limitations of different imaging methods. A new technique using Infrared Optical Coherence Tomography (OCT) revealed previously unknown details of the internal structure of M. xanthus fruiting bodies consisting of interconnected pockets of relative high and low spore density regions. To make sense of the experimentally observed structure, modeling and computer simulations were used to test a hypothesized mechanism that could produce high-density pockets of spores. The mechanism consists of self-propelled cells aligning with each other and signaling by end-to-end contact to coordinate the process of differentiation resulting in a pattern of clusters observed in the experiment. The integration of novel OCT experimental techniques with computational simulations can provide new insight into the mechanisms that can give rise to the pattern formation seen in other biological systems such as dictyostelids, social amoeba known to form multicellular aggregates observed as slugs under starvation conditions.

Indexed as

Computer SimulationGreen Fluorescent ProteinsMicroscopy, Electron, ScanningMyxococcus xanthusSpores, BacterialTomography, Optical CoherenceGreen Fluorescent Proteins

Identifiers

PMID23300427
PMCPMC3531287
OpenAlexW2037495831

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.