Evidence map›Paper›PMID 23300418›Full record

ArticlePLoS computational biology2012

Chapter 10: Mining genome-wide genetic markers.

Xiang Zhang, Shunping Huang, Zhaojun Zhang, Wei Wang

Abstract read
In one paragraph

Article in PLoS computational biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Brief Survey on Machine Learning in Epistasis.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  2. Investigating the Impact of a Genome-Wide Supported Bipolar Risk Variant of MAD1L1 on the Human Reward System.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2016
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xiang ZhangDepartment of Electrical Engineering and Computer Science, Case Western Reserve University, Ohio, United States of America.
Shunping Huang
Zhaojun Zhang
Wei Wang

Funding

UNC and PERLEGEN, IncP50GM076468 · NIGMS · JACKSON LABORATORY · PI PETKOV, PETKO M · 2006 to 2015
$31.0M
An Interdisciplinary program for systems genomics of complex behaviorsP50MH090338 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PARDO-MANUEL DE VILLENA, FERNANDO · 2009 to 2010
$6.0M
NIGMS NIH HHS GM076468NIGMS NIH HHS P50 GM076468NIMH NIH HHS MH090338NIMH NIH HHS P50 MH090338
6 · The paper itself

Abstract

Genome-wide association study (GWAS) aims to discover genetic factors underlying phenotypic traits. The large number of genetic factors poses both computational and statistical challenges. Various computational approaches have been developed for large scale GWAS. In this chapter, we will discuss several widely used computational approaches in GWAS. The following topics will be covered: (1) An introduction to the background of GWAS. (2) The existing computational approaches that are widely used in GWAS. This will cover single-locus, epistasis detection, and machine learning methods that have been recently developed in biology, statistic, and computer science communities. This part will be the main focus of this chapter. (3) The limitations of current approaches and future directions.

Indexed as

Genetic MarkersGenome-Wide Association StudyInformation Storage and RetrievalAlgorithmsHumansModels, GeneticGenetic Markers

Identifiers

PMID23300418
PMCPMC3531292

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.