Evidence map›Paper›PMID 23299942›Full record

ArticleThe EMBO journal2013

Role of Saw1 in Rad1/Rad10 complex assembly at recombination intermediates in budding yeast.

Fuyang Li, Junachao Dong, Robin Eichmiller, Cory Holland, Eugen Minca, Rohit Prakash, Patrick Sung, Eun Yong Shim, Jennifer A Surtees, Sang Eun Lee

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 38 citations in OpenAlex.

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  6. Biochemistry and biophysics reports · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Fuyang LiDepartment of Molecular Medicine, Institute of Biotechnology, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229-3900, USA.
Junachao Dong
Robin Eichmiller
Cory Holland
Eugen Minca
Rohit Prakash
Patrick Sung
Eun Yong Shim
Jennifer A Surtees
Sang Eun Lee
The University of Texas Health Science Center at San Antonio · USUniversity at Buffalo, State University of New York · USYale University · US

Funding

Mechanisms of Error Prone Repair of DNA BreaksR01GM071011 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEE, SANG EUN · 2004 to 2021
$4.5M
FORMATION AND RESOLUTION OF RECOMBINATION INTERMEDIATESR01GM057814 · NIGMS · YALE UNIVERSITY · PI SUNG, PATRICK · 1999 to 2016
$4.2M
A FRET/LRET Approach to Nascent Polypeptide ConformationR21GM071012 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CAVAGNERO, SILVIA · 2005 to 2006
$295k
NIGMS NIH HHS GM57814NIGMS NIH HHS GM71012NIGMS NIH HHS GM87549NIGMS NIH HHS R01 GM057814NIGMS NIH HHS R01 GM071011NIGMS NIH HHS R21 GM071012
6 · The paper itself

Abstract

The Saccharomyces cerevisiae Rad1/Rad10 complex is a multifunctional, structure-specific endonuclease that processes UV-induced DNA lesions, recombination intermediates, and inter-strand DNA crosslinks. However, we do not know how Rad1/Rad10 recognizes these structurally distinct target molecules or how it is incorporated into the protein complexes capable of incising divergent substrates. Here, we have determined the order and hierarchy of assembly of the Rad1/Rad10 complex, Saw1, Slx4, and Msh2/Msh3 complex at a 3' tailed recombination intermediate. We found that Saw1 is a structure-specific DNA binding protein with high affinity for splayed arm and 3'-flap DNAs. By physical interaction, Saw1 facilitates targeting of Rad1 at 3' tailed substrates in vivo and in vitro, and enhances 3' tail cleavage by Rad1/Rad10 in a purified system in vitro. Our results allow us to formulate a model of Rad1/Rad10/Saw1 nuclease complex assembly and 3' tail removal in recombination.

Indexed as

Chromatin ImmunoprecipitationDNA-Binding ProteinsDNA PrimersDNA RepairDNA Repair EnzymesElectrophoretic Mobility Shift AssayEndonucleasesGene Expression ProfilingMultiprotein ComplexesMutagenesisRecombination, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSingle-Strand Specific DNA and RNA EndonucleasesDNA-Binding ProteinsDNA PrimersDNA Repair EnzymesEndonucleasesMultiprotein ComplexesRAD10 protein, S cerevisiaeRAD1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSaw1 protein, S cerevisiaeSingle-Strand Specific DNA and RNA Endonucleases

Identifiers

PMID23299942
PMCPMC3595435
OpenAlexW2159995481

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.