Evidence map›Paper›PMID 23299920›Full record

ArticleEuropean journal of human genetics : EJHG2013

Genome-wide analysis shows association of epigenetic changes in regulators of Rab and Rho GTPases with spinal muscular atrophy severity.

Galina Y Zheleznyakova, Sarah Voisin, Anton V Kiselev, Markus Sällman Almén, Miguel J Xavier, Marianna A Maretina, Lyudmila I Tishchenko, Robert Fredriksson, Vladislav S Baranov, Helgi B Schiöth

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  6. Article
  7. In Search of Spinal Muscular Atrophy Disease Modifiers.International journal of molecular sciences · 2024
    Review
  8. Article
  9. Article
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  11. Article
  12. Review
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  17. Novel challenges in spinal muscular atrophy - How to screen and whom to treat?Annals of clinical and translational neurology · 2019
    Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Galina Y ZheleznyakovaFaculty of Biology and Soil Science, Saint-Petersburg State University, Saint-Petersburg, Russia. galinazheleznyakova@gmail.com
Sarah Voisin
Anton V Kiselev
Markus Sällman Almén
Miguel J Xavier
Marianna A Maretina
Lyudmila I Tishchenko
Robert Fredriksson
Vladislav S Baranov
Helgi B Schiöth
Uppsala University · SEResearch Institute of Obstetrics and Gynecology named after D.O. Ott · RUSt Petersburg University · RUSaint Petersburg State University of Architecture and Civil Engineering · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spinal muscular atrophy (SMA) is a monogenic disorder that is subdivided into four different types and caused by survival motor neuron gene 1 (SMN1) deletion. Discordant cases of SMA suggest that there exist additional severity modifying factors, apart from the SMN2 gene copy number. Here we performed the first genome-wide methylation profiling of SMA patients and healthy individuals to study the association of DNA methylation status with the severity of the SMA phenotype. We identified strong significant differences in methylation level between SMA patients and healthy controls in CpG sites close to the genes CHML, ARHGAP22, CYTSB, CDK2AP1 and SLC23A2. Interestingly, the CHML and ARHGAP22 genes are associated with the activity of Rab and Rho GTPases, which are important regulators of vesicle formation, actin dynamics, axonogenesis, processes that could be critical for SMA development. We suggest that epigenetic modifications may influence the severity of SMA and that these novel genetic positions could prove to be valuable biomarkers for the understanding of SMA pathogenesis.

Indexed as

Epigenesis, GeneticAdolescentAdultCase-Control StudiesChildChild, PreschoolCpG IslandsDNA MethylationGene OntologyGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansInfantMaleMuscular Atrophy, Spinalrab GTP-Binding Proteinsrab GTP-Binding Proteinsrho GTP-Binding Proteins

Identifiers

PMID23299920
PMCPMC3746269
OpenAlexW1983136482

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.