Evidence map›Paper›PMID 23299338›Full record

ArticlePlant signaling & behavior2013

A novel abi5 allele reveals the importance of the conserved Ala in the C3 domain for regulation of downstream genes and salt tolerance during germination in Arabidopsis.

Kenji Tezuka, Teruaki Taji, Takahisa Hayashi, Yoichi Sakata

Open access · hybridAbstract read
In one paragraph

Article in Plant signaling & behavior, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

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  4. BarleyFrontiers in plant science · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kenji TezukaDepartment of BioScience; Tokyo University of Agriculture; Tokyo, Japan; Department of Applied Biology and Chemistry; Faculty of Applied Biosciences; Tokyo University of Agriculture; Tokyo, Japan.
Teruaki Taji
Takahisa Hayashi
Yoichi Sakata
Tokyo University of Agriculture · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Abscisic acid (ABA) signal transduction during Arabidopsis seed development and germination requires a Group A bZIP transcription factor encoded by ABA INSENSITIVE5 (ABI5). In addition to the basic leucine zipper DNA binding domain, Group A bZIPs are characterized by three N-terminal conserved regions (C1, C2 and C3) and one C-terminal conserved region (C4). These conserved regions are considered to play roles in ABI5 functions; however, except for the phosphorylation site, the importance of the highly conserved amino acids is unclear. Here, we report a novel abi5 recessive allele (abi5-9) that encodes an intact ABI5 protein with one amino acid substitution (A214G) in the C3 domain. The abi5-9 plants showed ABA insensitivity during germination and could germinate on medium containing 175 mM NaCl or 500 mM mannitol. Em1 and Em6--both encoding late embryogenesis abundant (LEA) proteins and directly targeted by ABI5 regulation--were expressed at very low levels in abi5-9 plants compared with the wild type. In yeast, the abi5-9 protein exhibited greatly reduced interaction with ABI3 compared with ABI5. These data suggest that Ala214 in ABI5 contributes to the function of ABI5 via its interaction with ABI3.

Indexed as

AllelesGene Expression Regulation, PlantAbscisic AcidAlanineArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsGene Expression Regulation, DevelopmentalGenes, PlantGenotypeGerminationLeucine ZippersMutationPlants, Genetically ModifiedProtein Structure, TertiarySalt ToleranceABI5 protein, ArabidopsisAbscisic AcidAlanineArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsABAabiotic stress toleranceabscisic acidgene expressiongrowth controlhormone signalingplant signalingtranscriptional regulation

Identifiers

PMID23299338
PMCPMC3676515
OpenAlexW2008134799

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.