Evidence map›Paper›PMID 23298836›Full record

ArticleThe Journal of clinical investigation2013

The tumorigenic FGFR3-TACC3 gene fusion escapes miR-99a regulation in glioblastoma.

Brittany C Parker, Matti J Annala, David E Cogdell, Kirsi J Granberg, Yan Sun, Ping Ji, Xia Li, Joy Gumin, Hong Zheng, Limei Hu and 11 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 146 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
146citing papers in PubMed, 1 pooled it
13.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

146 citing papers in PubMed, 1 synthesis or guideline pooled it, 215 citations in OpenAlex.

  1. Pooled it
  2. Detection, Characterization, and Inhibition of FGFR-TACC Fusions in IDH Wild-type Glioma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2015
    Trial
  3. Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Diffuse glioma withRadiology case reports · 2025
    Article
  15. Review
  16. Review
  17. Article
  18. Pharmacological and Biological Targeting of FGFR1 in Cancer.Current issues in molecular biology · 2024
    Review
  19. Diffuse Gliomas withCancers · 2024
    Review
  20. Review

86 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 4 countries.

Brittany C ParkerDepartment of Pathology, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Matti J Annala
David E Cogdell
Kirsi J Granberg
Yan Sun
Ping Ji
Xia Li
Joy Gumin
Hong Zheng
Limei Hu
Olli Yli-Harja
Hannu Haapasalo
Tapio Visakorpi
Xiuping Liu
Chang-Gong Liu
Raymond Sawaya
Gregory N Fuller
Kexin Chen
Frederick F Lang
Matti Nykter
Wei Zhang
The University of Texas MD Anderson Cancer Center · USTampere University of Applied Sciences · FITianjin Medical University · CNInstitute of Biomedical Science · GBTampere University · FIThe University of Texas Health Science Center at Houston · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Center for Systems Analysis of the Cancer RegulomeU24CA143835 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI SHMULEVICH, ILYA · 2009 to 2016
$10.6M
NCI NIH HHS CA016672NCI NIH HHS P30 CA016672NCI NIH HHS U24 CA143835NCI NIH HHS U24CA143835
6 · The paper itself

Abstract

Fusion genes are chromosomal aberrations that are found in many cancers and can be used as prognostic markers and drug targets in clinical practice. Fusions can lead to production of oncogenic fusion proteins or to enhanced expression of oncogenes. Several recent studies have reported that some fusion genes can escape microRNA regulation via 3'-untranslated region (3'-UTR) deletion. We performed whole transcriptome sequencing to identify fusion genes in glioma and discovered FGFR3-TACC3 fusions in 4 of 48 glioblastoma samples from patients both of mixed European and of Asian descent, but not in any of 43 low-grade glioma samples tested. The fusion, caused by tandem duplication on 4p16.3, led to the loss of the 3'-UTR of FGFR3, blocking gene regulation of miR-99a and enhancing expression of the fusion gene. The fusion gene was mutually exclusive with EGFR, PDGFR, or MET amplification. Using cultured glioblastoma cells and a mouse xenograft model, we found that fusion protein expression promoted cell proliferation and tumor progression, while WT FGFR3 protein was not tumorigenic, even under forced overexpression. These results demonstrated that the FGFR3-TACC3 gene fusion is expressed in human cancer and generates an oncogenic protein that promotes tumorigenesis in glioblastoma.

Indexed as

Gene Fusion3' Untranslated RegionsAnimalsBase SequenceBrain NeoplasmsChromosomes, Human, Pair 4Gene Expression Regulation, NeoplasticGlioblastomaGliomaHumansMaleMiceMice, NudeMicroRNAsMicrotubule-Associated ProteinsMolecular Sequence Data3' Untranslated RegionsFGFR3 protein, humanMicroRNAsMicrotubule-Associated ProteinsMIRN99 microRNA, humanOncogene Proteins, FusionReceptor, Fibroblast Growth Factor, Type 3RNA, NeoplasmTACC3 protein, human

Identifiers

PMID23298836
PMCPMC3561838
OpenAlexW2081069777

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.