Evidence map›Paper›PMID 23297386›Full record

ArticleInfection and immunity2013

ToxR recognizes a direct repeat element in the toxT, ompU, ompT, and ctxA promoters of Vibrio cholerae to regulate transcription.

Thomas J Goss, Sarah J Morgan, Emily L French, Eric S Krukonis

Abstract read
In one paragraph

Article in Infection and immunity, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Structures ofScience advances · 2026
    Article
  2. Strain-dependentFrontiers in microbiology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. eLife · 2023
    Article
  7. ToxR activates theProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. σMolecular microbiology · 2021
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Vesicles FromFrontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Thomas J GossDepartment of Biologic and Materials Sciences, University of Michigan School of Dentistry, Ann Arbor, Michigan, USA.
Sarah J Morgan
Emily L French
Eric S Krukonis

Funding

Regulation of Vibrio cholerae virulence by ToxR and TcpPR01AI075087 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KRUKONIS, ERIC S · 2007 to 2010
$1.2M
NIAID NIH HHS R01 AI075087PHS HHS NIH NIAID R01 AI075087
6 · The paper itself

Abstract

ToxR facilitates TcpP-mediated activation of the toxT promoter in Vibrio cholerae, initiating a regulatory cascade that culminates in cholera toxin secretion and toxin coregulated pilus expression. ToxR binds a region from -104 to -68 of the toxT promoter, from which ToxR recruits TcpP to the TcpP-binding site from -53 to -38. To precisely define the ToxR-binding site within the toxT promoter, promoter derivatives with single-base-pair transversions spanning the ToxR-footprinted region were tested for transcription activation and DNA binding. Nine transversions between -96 to -83 reduced toxT promoter activity 3-fold or greater, and all nine reduced the relative affinity of the toxT promoter for ToxR at least 2-fold, indicating that activation defects were due largely to reduced binding of ToxR to the toxT promoter. Nucleotides important for ToxR-dependent toxT activation revealed a consensus sequence of TNAAA-N(5)-TNAAA extending from -96 to -83, also present in other ToxR-regulated promoters. When these consensus nucleotides were mutated in the ompU, ompT, or ctxA promoters, ToxR-mediated regulation was disrupted. Thus, we have defined the core ToxR-binding site present in numerous ToxR-dependent promoters and we have precisely mapped the binding site for ToxR to a position three helical turns upstream of TcpP in the toxT promoter.

Indexed as

Adhesins, BacterialBacterial ProteinsBase SequenceBinding SitesDNA-Binding ProteinsDNA FootprintingGene Expression Regulation, BacterialMolecular Sequence DataPorinsPromoter Regions, GeneticProtein BindingTranscription FactorsVibrio choleraeAdhesins, BacterialBacterial ProteinsDNA-Binding ProteinsompT protein, bacteriaOmpU protein, Vibrio choleraePorinstcpN protein, Vibrio choleraetoxR protein, Vibrio choleraeTranscription Factors

Identifiers

PMID23297386
PMCPMC3584884

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.