Evidence map›Paper›PMID 23297363›Full record

ArticleHuman molecular genetics2013

Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.

Heather J Cordell, Ana Töpf, Chrysovalanto Mamasoula, Alex V Postma, Jamie Bentham, Diana Zelenika, Simon Heath, Gillian Blue, Catherine Cosgrove, Javier Granados Riveron and 27 more

Abstract read
In one paragraph

Article in Human molecular genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Trial
  6. Trial
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Human Genetics of Tetralogy of Fallot and Double-Outlet Right Ventricle.Advances in experimental medicine and biology · 2024
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Genomic frontiers in congenital heart disease.Nature reviews. Cardiology · 2022
    Review
  19. Article
  20. Fetal Blood Flow and Genetic Mutations in Conotruncal Congenital Heart Disease.Journal of cardiovascular development and disease · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Heather J CordellInstitute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK.
Ana Töpf
Chrysovalanto Mamasoula
Alex V Postma
Jamie Bentham
Diana Zelenika
Simon Heath
Gillian Blue
Catherine Cosgrove
Javier Granados Riveron
Rebecca Darlay
Rachel Soemedi
Ian J Wilson
Kristin L Ayers
Thahira J Rahman
Darroch Hall
Barbara J M Mulder
Aelko H Zwinderman
Klaartje van Engelen
J David Brook
Kerry Setchfield
Frances A Bu'Lock
Chris Thornborough
John O'Sullivan
A Graham Stuart
Jonathan Parsons
Shoumo Bhattacharya
David Winlaw
Seema Mital
Marc Gewillig
Jeroen Breckpot
Koen Devriendt
Antoon F M Moorman
Anita Rauch
G Mark Lathrop
Bernard D Keavney
Judith A Goodship

Funding

Biotechnology and Biological Sciences Research Council G20234British Heart Foundation PG/07/045/22690British Heart Foundation RG/07/010/23676British Heart Foundation RG/10/17/28553British Heart Foundation RG/13/10/30376Wellcome Trust 085475Wellcome Trust 087436Wellcome Trust 090532
6 · The paper itself

Abstract

We conducted a genome-wide association study to search for risk alleles associated with Tetralogy of Fallot (TOF), using a northern European discovery set of 835 cases and 5159 controls. A region on chromosome 12q24 was associated (P = 1.4 × 10(-7)) and replicated convincingly (P = 3.9 × 10(-5)) in 798 cases and 2931 controls [per allele odds ratio (OR) = 1.27 in replication cohort, P = 7.7 × 10(-11) in combined populations]. Single nucleotide polymorphisms in the glypican 5 gene on chromosome 13q32 were also associated (P = 1.7 × 10(-7)) and replicated convincingly (P = 1.2 × 10(-5)) in 789 cases and 2927 controls (per allele OR = 1.31 in replication cohort, P = 3.03 × 10(-11) in combined populations). Four additional regions on chromosomes 10, 15 and 16 showed suggestive association accompanied by nominal replication. This study, the first genome-wide association study of a congenital heart malformation phenotype, provides evidence that common genetic variation influences the risk of TOF.

Indexed as

Genome-Wide Association StudyCase-Control StudiesChromosomes, Human, Pair 12Chromosomes, Human, Pair 13FemaleGene FrequencyGenetic LociHumansLinkage DisequilibriumMalePolymorphism, Single NucleotideTetralogy of Fallot

Identifiers

PMID23297363
PMCPMC3596849

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.