ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2013
De novo assembly and functional annotation of the olive (Olea europaea) transcriptome.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 1 of them a synthesis that pooled it.
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Who cites it
46 citing papers in PubMed, 1 synthesis or guideline pooled it, 89 citations in OpenAlex.
- Meta-analysis of transcriptome reveals key genes relating to oil quality in olive.BMC genomics · 2023Pooled it
- PacBio genome assembly of Olea europaea L. subsp. europaea cultivars Frantoio and Leccino.Scientific data · 2025Article
- Multi-Omic Advances in Olive Tree (Biology · 2025Review
- Molecular characterization of homogentisate phytyltransferase and methylphytylbenzoquinol methyltransferase genes from olive fruit with regard to the tocopherol content and the response to abiotic stresses.Frontiers in plant science · 2025Article
- Functional Characterization of Four Olive Squalene Synthases with Respect to the Squalene Content of the Virgin Olive Oil.Journal of agricultural and food chemistry · 2023Article
- The history of olive cultivation in the southern Levant.Frontiers in plant science · 2023Review
- Multiomics Approach To Decipher the Origin of Chlorophyll Content in Virgin Olive Oil.Journal of agricultural and food chemistry · 2022Article
- Utility of EST-SNP Markers for Improving Management and Use of Olive Genetic Resources: A Case Study at the Worldwide Olive Germplasm Bank of Córdoba.Plants (Basel, Switzerland) · 2022Article
- Review
- Microsatellite Markers in Olives (Foods (Basel, Switzerland) · 2021Review
- Temporal transcriptome profiling of developing seeds reveals candidate genes involved in oil accumulation in safflower (Carthamus tinctorius L.).BMC plant biology · 2021Article
- Genetic Structure and Core Collection of Olive Germplasm from Albania Revealed by Microsatellite Markers.Genes · 2021Article
- Combined Metabolome and Transcriptome Profiling Reveal Optimal Harvest Strategy Model Based on Different Production Purposes in Olive.Foods (Basel, Switzerland) · 2021Article
- Distinct Physiological Roles of Three Phospholipid:Diacylglycerol Acyltransferase Genes in Olive Fruit with Respect to Oil Accumulation and the Response to Abiotic Stress.Frontiers in plant science · 2021Article
- Transcriptome and Hormone Analyses Revealed Insights into Hormonal and Vesicle Trafficking Regulation amongInternational journal of molecular sciences · 2020Article
- Genome wide association study of 5 agronomic traits in olive (Olea europaea L.).Scientific reports · 2019Article
- Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication.The Plant journal : for cell and molecular biology · 2019Article
- Integrated analysis of transcriptomic and proteomic data from tree peony (Horticulture research · 2019Article
- Transcriptomic time-series analysis of early development in olive from germinated embryos to juvenile tree.BMC genomics · 2018Article
- Comparative transcriptome analysis two genotypes of Acer truncatum Bunge seeds reveals candidate genes that influences seed VLCFAs accumulation.Scientific reports · 2018Article
Corrections and comments
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Authors and funding
18 authors at 7 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Olive breeding programmes are focused on selecting for traits as short juvenile period, plant architecture suited for mechanical harvest, or oil characteristics, including fatty acid composition, phenolic, and volatile compounds to suit new markets. Understanding the molecular basis of these characteristics and improving the efficiency of such breeding programmes require the development of genomic information and tools. However, despite its economic relevance, genomic information on olive or closely related species is still scarce. We have applied Sanger and 454 pyrosequencing technologies to generate close to 2 million reads from 12 cDNA libraries obtained from the Picual, Arbequina, and Lechin de Sevilla cultivars and seedlings from a segregating progeny of a Picual × Arbequina cross. The libraries include fruit mesocarp and seeds at three relevant developmental stages, young stems and leaves, active juvenile and adult buds as well as dormant buds, and juvenile and adult roots. The reads were assembled by library or tissue and then assembled together into 81 020 unigenes with an average size of 496 bases. Here, we report their assembly and their functional annotation.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.