Evidence map›Paper›PMID 23295669›Full record

ArticleNucleic acids research2013

Structural and functional evidence that Rad4 competes with Rad2 for binding to the Tfb1 subunit of TFIIH in NER.

Julien Lafrance-Vanasse, Geneviève Arseneault, Laurent Cappadocia, Pascale Legault, James G Omichinski

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. XPG: a multitasking genome caretaker.Cellular and molecular life sciences : CMLS · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Architecture of the human XPC DNA repair and stem cell coactivator complex.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Julien Lafrance-VanasseDépartement de Biochimie, Université de Montréal C.P. 6128 Succursale Centre-Ville, Montréal, Québec, Canada H3C 3J7.
Geneviève Arseneault
Laurent Cappadocia
Pascale Legault
James G Omichinski
Université de Montréal · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

XPC/Rad4 (human/yeast) recruits transcription faction IIH (TFIIH) to the nucleotide excision repair (NER) complex through interactions with its p62/Tfb1 and XPB/Ssl2 subunits. TFIIH then recruits XPG/Rad2 through interactions with similar subunits and the two repair factors appear to be mutually exclusive within the NER complex. Here, we show that Rad4 binds the PH domain of the Tfb1 (Tfb1PH) with high affinity. Structural characterization of a Rad4-Tfb1PH complex demonstrates that the Rad4-binding interface is formed using a motif similar to one used by Rad2 to bind Tfb1PH. In vivo studies in yeast demonstrate that the N-terminal Tfb1-binding motif and C-terminal TFIIH-binding motif of Rad4 are both crucial for survival following exposure to UV irradiation. Together, these results support the hypothesis that XPG/Rad2 displaces XPC/Rad4 from the repair complex in part through interactions with the Tfb1/p62 subunit of TFIIH. The Rad4-Tfb1PH structure also provides detailed information regarding, not only the interplay of TFIIH recruitment to the NER, but also links the role of TFIIH in NER and transcription.

Indexed as

DNA RepairAmino Acid SequenceBinding, CompetitiveBinding SitesDNA-Binding ProteinsEndodeoxyribonucleasesMicrobial ViabilityModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein Interaction Domains and MotifsSaccharomyces cerevisiae ProteinsTranscription Factors, TFIIUltraviolet RaysDNA-Binding ProteinsEndodeoxyribonucleasesRAD2 protein, S cerevisiaeRAD34 protein, S cerevisiaeRad4 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTFB1 protein, S cerevisiaeTranscription Factors, TFII

Identifiers

PMID23295669
PMCPMC3575800
OpenAlexW2029995604

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.