Evidence map›Paper›PMID 23292782›Full record

ArticleJournal of bacteriology2013

The ROK family regulator Rok7B7 pleiotropically affects xylose utilization, carbon catabolite repression, and antibiotic production in streptomyces coelicolor.

Magdalena A Świątek, Jacob Gubbens, Giselda Bucca, Eunjung Song, Yung-Hun Yang, Emma Laing, Byung-Gee Kim, Colin P Smith, Gilles P van Wezel

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
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  5. Review
  6. Systems-wide analysis of the ROK-family regulatory geneApplied and environmental microbiology · 2023
    Article
  7. Article
  8. Review
  9. Article
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  14. Review
  15. Article
  16. Amycomicin is a potent and specific antibiotic discovered with a targeted interaction screen.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. NgcEMicrobes and environments · 2018
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Magdalena A ŚwiątekMolecular Biotechnology, Institute of Biology Leiden, Leiden University, Leiden, The Netherlands.
Jacob Gubbens
Giselda Bucca
Eunjung Song
Yung-Hun Yang
Emma Laing
Byung-Gee Kim
Colin P Smith
Gilles P van Wezel
Leiden University · NLSeoul National University · KRUniversity of Surrey · GB

Funding

Biotechnology and Biological Sciences Research Council G18886
6 · The paper itself

Abstract

Members of the ROK family of proteins are mostly transcriptional regulators and kinases that generally relate to the control of primary metabolism, whereby its member glucose kinase acts as the central control protein in carbon control in Streptomyces. Here, we show that deletion of SCO6008 (rok7B7) strongly affects carbon catabolite repression (CCR), growth, and antibiotic production in Streptomyces coelicolor. Deletion of SCO7543 also affected antibiotic production, while no major changes were observed after deletion of the rok family genes SCO0794, SCO1060, SCO2846, SCO6566, or SCO6600. Global expression profiling of the rok7B7 mutant by proteomics and microarray analysis revealed strong upregulation of the xylose transporter operon xylFGH, which lies immediately downstream of rok7B7, consistent with the improved growth and delayed development of the mutant on xylose. The enhanced CCR, which was especially obvious on rich or xylose-containing media, correlated with elevated expression of glucose kinase and of the glucose transporter GlcP. In liquid-grown cultures, expression of the biosynthetic enzymes for production of prodigionines, siderophores, and calcium-dependent antibiotic (CDA) was enhanced in the mutant, and overproduction of prodigionines was corroborated by matrix-assisted laser desorption ionization-time-of-flight analysis. These data present Rok7B7 as a pleiotropic regulator of growth, CCR, and antibiotic production in Streptomyces.

Indexed as

Catabolite RepressionAnti-Bacterial AgentsBacterial ProteinsBiological TransportDNA, BacterialGene DeletionGene Expression ProfilingGene Expression Regulation, BacterialMutationPeptidesPhylogenyProdigiosinProteomicsSiderophoresStreptomyces coelicolorTranscription, GeneticAnti-Bacterial AgentsBacterial ProteinsCDA antibioticDNA, BacterialPeptidesprodiginineProdigiosinSiderophoresXylose

Identifiers

PMID23292782
PMCPMC3591991
OpenAlexW2062232551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.