Evidence map›Paper›PMID 23292734›Full record

ArticleThe Plant cell2013

Repression of essential chloroplast genes reveals new signaling pathways and regulatory feedback loops in chlamydomonas.

Silvia Ramundo, Michèle Rahire, Olivier Schaad, Jean-David Rochaix

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 114 citations in OpenAlex.

  1. VIA1 is a conserved regulator of thylakoid membrane integrity that acts through VIPP1.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  3. Proceedings of the National Academy of Sciences of the United States of America · 2026
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  17. Comparative chloroplast genome analyses ofFrontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Silvia RamundoDepartment of Molecular Biology and Plant Biology, University of Geneva, 1211 Geneva, Switzerland.
Michèle Rahire
Olivier Schaad
Jean-David Rochaix
University of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although reverse genetics has been used to elucidate the function of numerous chloroplast proteins, the characterization of essential plastid genes and their role in chloroplast biogenesis and cell survival has not yet been achieved. Therefore, we developed a robust repressible chloroplast gene expression system in the unicellular alga Chlamydomonas reinhardtii based mainly on a vitamin-repressible riboswitch, and we used this system to study the role of two essential chloroplast genes: ribosomal protein S12 (rps12), encoding a plastid ribosomal protein, and rpoA, encoding the α-subunit of chloroplast bacterial-like RNA polymerase. Repression of either of these two genes leads to the arrest of cell growth, and it induces a response that involves changes in expression of nuclear genes implicated in chloroplast biogenesis, protein turnover, and stress. This response also leads to the overaccumulation of several plastid transcripts and reveals the existence of multiple negative regulatory feedback loops in the chloroplast gene circuitry.

Indexed as

Signal TransductionAlgal ProteinsAnimalsBase SequenceChlamydomonas reinhardtiiChloroplast ProteinsChloroplastsCluster AnalysisDNA-Directed RNA PolymerasesFeedback, PhysiologicalGene ExpressionGene Expression Regulation, PlantGenes, EssentialImmune SeraMolecular Sequence DataPolyribosomesAlgal ProteinsChloroplast ProteinsDNA-Directed RNA PolymerasesImmune SeraRibosomal Proteinsribosomal protein S12

Identifiers

PMID23292734
PMCPMC3584532
OpenAlexW2153489021

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.