Evidence map›Paper›PMID 23291497›Full record

ArticleMutation research2012

Zinc Finger Nuclease induced DNA double stranded breaks and rearrangements in MLL.

To Uyen Do, Bay Ho, Shyh-Jen Shih, Andrew Vaughan

Abstract read
In one paragraph

Article in Mutation research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

To Uyen DoUniversity of California, Davis, CA 95616, USA.
Bay Ho
Shyh-Jen Shih
Andrew Vaughan
University of California, Davis · US

Funding

RETROVIRUS PACKAGING, CONCENTRATING AND TITERINGP01CA105049 · NCI · LOYOLA UNIVERSITY CHICAGO · PI DIAZ, MANUEL ORESTES · 2005 to 2009
$6.5M
NCI NIH HHS CA105049NCI NIH HHS P01 CA105049
6 · The paper itself

Abstract

Radiation treatment or chemotherapy has been linked with a higher risk of secondary cancers such as therapy related Acute Myeloid Leukemia (tAML). Several of these cancers have been shown to be correlated to the introduction of double stranded breaks (DSB) and rearrangements within the Mixed Lineage Leukemia (MLL) gene. We used Zinc Finger Nucleases (ZFNs) to introduce precise cuts within MLL to examine how a single DNA DSB might lead to chromosomal rearrangements. A ZFN targeting exon 13 within the Breakpoint Cluster Region of MLL was transiently expressed in a human lymphoblast cell line originating from a CML patient. Although FISH analysis showed ZFN DSB at this region increased the rate of MLL fragmentation, we were unable to detect leukemogenic rearrangements or translocations via inverse PCR. Interestingly, gene fragmentation as well as small interstitial deletions, insertions and base substitutions increased with the inhibition of DNA-PK, suggesting repair of this particular DSB is linked to non-homologous end joining (NHEJ). Although mis-repair of DSBs may be necessary for the initiation of leukemogenic translocations, a MLL targeted DNA break alone is insufficient.

Indexed as

DNA Breaks, Double-StrandedCell LineDNA FragmentationDNA RepairEndodeoxyribonucleasesHumansLeukemia, Myeloid, AcuteMutagenesis, InsertionalMutationMyeloid-Lymphoid Leukemia ProteinTranslocation, GeneticEndodeoxyribonucleasesMyeloid-Lymphoid Leukemia Protein

Identifiers

PMID23291497
PMCPMC3578303
OpenAlexW1978281795

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.