Evidence map›Paper›PMID 23291222›Full record

ArticlePeptides2013

wrwyrggrywrw is a single-chain functional analog of the Holliday junction-binding homodimer, (wrwycr)2.

Marc C Rideout, Ilham Naili, Jeffrey L Boldt, America Flores-Fujimoto, Sukanya Patra, Jason E Rostron, Anca M Segall

Abstract read
In one paragraph

Article in Peptides, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Marc C RideoutDepartment of Biology and Center for Microbial Sciences, San Diego State University, San Diego, CA 92182, USA.
Ilham Naili
Jeffrey L Boldt
America Flores-Fujimoto
Sukanya Patra
Jason E Rostron
Anca M Segall
San Diego State University · US

Funding

PATHWAYS OF LAMBDA SITE SPECIFIC RECOMBINATIONR01GM052847 · NIGMS · SAN DIEGO STATE UNIVERSITY · PI SEGALL, ANCA MARA · 1996 to 2010
$2.4M
Novel antibiotics that trap Holliday junctionsR01AI058253 · NIAID · SAN DIEGO STATE UNIVERSITY · PI SEGALL, ANCA MARA · 2004 to 2008
$2.3M
NIAID NIH HHS R01 AI058253NIAID NIH HHS R01-AI058253NIGMS NIH HHS R01 GM052847NIGMS NIH HHS R01-GM052847
6 · The paper itself

Abstract

DNA repair pathways in bacteria that use homologous recombination involve the formation and subsequent resolution of Holliday junction (HJ) intermediates. We have previously identified several hexameric peptides that bind to HJs and interfere with HJ processing enzymes in vitro. The peptide WRWYCR and its D-amino acid stereoisomer wrwycr, are potent antibacterial agents. These hexapeptides must form homodimers in order to interact stably with HJs, and inhibit bacterial growth, and this represents a potential limitation. Herein we describe a disulfide bond-independent inhibitor, WRWYRGGRYWRW and its D-stereoisomer wrwyrggrywrw. We have characterized these single-chain, linear analogs of the hexapeptides, and show that in addition to effectively binding to HJs, and inhibiting the activity of DNA repair enzymes that process HJs, they have equal or greater potency against Gram-positive and Gram-negative bacterial growth. The analogs were also shown to cause DNA damage in bacteria, and disrupt the integrity of the bacterial cytoplasmic membrane. Finally, we found that they have little toxicity toward several eukaryotic cell types at concentrations needed to inhibit bacterial growth.

Indexed as

Anti-Bacterial AgentsBacteriaDNA, CruciformDNA DamageDNA RepairHomologous RecombinationPeptidesProtein MultimerizationStereoisomerismAnti-Bacterial AgentsDNA, CruciformPeptides

Identifiers

PMID23291222
PMCPMC3646928
OpenAlexW1988325289

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.