Evidence map›Paper›PMID 23288935›Full record

ArticleGenetics2013

Efficient targeted mutagenesis in medaka using custom-designed transcription activator-like effector nucleases.

Satoshi Ansai, Tetsushi Sakuma, Takashi Yamamoto, Hiroyoshi Ariga, Norihito Uemura, Ryosuke Takahashi, Masato Kinoshita

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 114 citations in OpenAlex.

  1. Review
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  8. Sexually dimorphic role of oxytocin in medaka mate choice.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Renal lesions in leptin receptor-deficient medaka (Journal of toxicologic pathology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Satoshi AnsaiDivision of Applied Bioscience, Graduate School of Agriculture Kyoto University, Sakyo-ku, Kyoto, Japan.
Tetsushi Sakuma
Takashi Yamamoto
Hiroyoshi Ariga
Norihito Uemura
Ryosuke Takahashi
Masato Kinoshita
Kyoto University · JPHiroshima University · JPHokkaido University · JPJapan Science and Technology Agency · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcription activator-like effector nucleases (TALENs) have become powerful tools for targeted genome editing. Here we demonstrate efficient targeted mutagenesis in medaka (Oryzias latipes), which serves as an excellent vertebrate model for genetics and genomics. We designed and constructed a pair of TALENs targeting the medaka DJ-1 gene, a homolog of human DJ-1 (PARK7). These TALENs induced a number of insertions and deletions in the injected embryos with extremely high efficiency. This induction of mutations occurred in a dose-dependent manner. All screened G0 fish injected with the TALENs transmitted the TALEN-induced mutations to the next generation with high efficiency (44-100%). We also confirmed that these TALENs induced site-specific mutations because none of the mutations were found at potential off-target sites. In addition, the DJ-1 protein was lost in DJ-1(Δ7/Δ7) fish that carried a TALEN-induced frameshift mutation in both alleles. We also investigated the effect of the N- and C-terminal regions of the transcription activator-like (TAL) effector domain on the gene-disrupting activity of DJ1-TALENs and found that 287 amino acids at the N terminus and 63 amino acids at the C terminus of the TAL domain exhibited the highest disrupting activity in the injected embryos. Our results suggest that TALENs enable us to rapidly and efficiently establish knockout medaka strains. This is the first report of targeted mutagenesis in medaka using TALENs. The TALEN technology will expand the potential of medaka as a model system for genetics and genomics.

Indexed as

AllelesAmino Acid SequenceAnimalsEndodeoxyribonucleasesFish ProteinsFrameshift MutationGene TargetingIntracellular Signaling Peptides and ProteinsMolecular Sequence DataMutagenesis, Site-DirectedOryziasProtein Structure, TertiaryEndodeoxyribonucleasesFish ProteinsIntracellular Signaling Peptides and Proteins

Identifiers

PMID23288935
PMCPMC3583995
OpenAlexW2151611659

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.