Evidence map›Paper›PMID 23288897›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Insights into the regulation of the human COP9 signalosome catalytic subunit, CSN5/Jab1.

Aude Echalier, Yunbao Pan, Melissa Birol, Nicolas Tavernier, Lionel Pintard, François Hoh, Christine Ebel, Nathalie Galophe, François X Claret, Christian Dumas

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 107 citations in OpenAlex.

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  12. Protein neddylation and its role in health and diseases.Signal transduction and targeted therapy · 2024
    Review
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  17. Machine Learning-Enabled Pipeline for Large-Scale Virtual Drug Screening.Journal of chemical information and modeling · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 2 countries.

Aude EchalierCentre de Biochimie Structurale, Centre National de la Recherche Scientifique, Institut National de la Santé et de la Recherche Médicale-Unités Mixtes de Recherche 5048 and 1054, Université Montpellier I, 34090 Montpellier, France.
Yunbao Pan
Melissa Birol
Nicolas Tavernier
Lionel Pintard
François Hoh
Christine Ebel
Nathalie Galophe
François X Claret
Christian Dumas
Inserm · FRInstitut Jacques Monod · FRUniversité de Montpellier · FRCentre de Biologie Structurale · FRInstitut de Biologie Structurale · FRThe University of Texas at Austin · USThe University of Texas MD Anderson Cancer Center · US

Funding

U OF TEXAS HLTH SCI CTR HOUSTON CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCESUL1RR024148 · NCRR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2006 to 2010
$27.9M
Targeting JAB1 Oncogenic Function in Breast CancerR01CA090853 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI CLARET, FRANCOIS X · 2002 to 2011
$2.5M
NCI NIH HHS R01 CA090853NCI NIH HHS R01-CA90853NCRR NIH HHS UL1 RR024148PHS HHS RP120451
6 · The paper itself

Abstract

The COP9 (Constitutive photomorphogenesis 9) signalosome (CSN), a large multiprotein complex that resembles the 19S lid of the 26S proteasome, plays a central role in the regulation of the E3-cullin RING ubiquitin ligases (CRLs). The catalytic activity of the CSN complex, carried by subunit 5 (CSN5/Jab1), resides in the deneddylation of the CRLs that is the hydrolysis of the cullin-neural precursor cell expressed developmentally downregulated gene 8 (Nedd8)isopeptide bond. Whereas CSN-dependent CSN5 displays isopeptidase activity, it is intrinsically inactive in other physiologically relevant forms. Here we analyze the crystal structure of CSN5 in its catalytically inactive form to illuminate the molecular basis for its activation state. We show that CSN5 presents a catalytic domain that brings essential elements to understand its activity control. Although the CSN5 active site is catalytically competent and compatible with di-isopeptide binding, the Ins-1 segment obstructs access to its substrate-binding site, and structural rearrangements are necessary for the Nedd8-binding pocket formation. Detailed study of CSN5 by molecular dynamics unveils signs of flexibility and plasticity of the Ins-1 segment. These analyses led to the identification of a molecular trigger implicated in the active/inactive switch that is sufficient to impose on CSN5 an active isopeptidase state. We show that a single mutation in the Ins-1 segment restores biologically relevant deneddylase activity. This study presents detailed insights into CSN5 regulation. Additionally, a dynamic monomer-dimer equilibrium exists both in vitro and in vivo and may be functionally relevant.

Indexed as

Amino Acid SequenceArginineCatalytic DomainCOP9 Signalosome ComplexCrystallography, X-RayEnzyme ActivationHumansIntracellular Signaling Peptides and ProteinsModels, MolecularMolecular Dynamics SimulationMolecular Sequence DataMutagenesis, Site-DirectedNEDD8 ProteinPeptide HydrolasesProtein MultimerizationProtein Structure, QuaternaryArginineCOP9 Signalosome ComplexCOPS5 protein, humanIntracellular Signaling Peptides and ProteinsNEDD8 ProteinNEDD8 protein, humanPeptide HydrolasesProtein SubunitsRecombinant Fusion ProteinsUbiquitinsZinc

Identifiers

PMID23288897
PMCPMC3557056
OpenAlexW1965667503

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.