Evidence map›Paper›PMID 23288846›Full record

ArticleThe Journal of biological chemistry2013

The N termini of a-subunit isoforms are involved in signaling between vacuolar H+-ATPase (V-ATPase) and cytohesin-2.

Hiroyuki Hosokawa, Phat Vinh Dip, Maria Merkulova, Anastasia Bakulina, Zhenjie Zhuang, Ashok Khatri, Xiaoying Jian, Shawn M Keating, Stephanie A Bueler, John L Rubinstein and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. The V-ATPaseInternational journal of molecular sciences · 2021
    Review
  6. Article
  7. Emerging links between endosomal pH and cancer.Cancer metastasis reviews · 2020
    Review
  8. Vacuolar HBiotarget · 2017
    Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Inhibition of Cytohesins Protects against Genetic Models of Motor Neuron Disease.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2015
    Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 4 countries.

Hiroyuki HosokawaCenter for Systems Biology, Program in Membrane Biology and Division of Nephrology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Phat Vinh Dip
Maria Merkulova
Anastasia Bakulina
Zhenjie Zhuang
Ashok Khatri
Xiaoying Jian
Shawn M Keating
Stephanie A Bueler
John L Rubinstein
Paul A Randazzo
Dennis A Ausiello
Gerhard Grüber
Vladimir Marshansky
Harvard University · USMassachusetts General Hospital · USNanyang Technological University · SGNational Institutes of Health · USUniversity of Toronto · CAHospital for Sick Children · CA

Funding

Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG · 1991 to 2026
$35.3M
Transgenic CoreP30DK057521 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI KAHN, BARBARA B. · 2000 to 2019
$31.4M
Regulation of ADP-ribosylation factorZIABC007365 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RANDAZZO, PAUL A · 2009 to 2025
$27.9M
SIGNALLING IN MESANGIAL CELLS--CALCIUM AND PHOPHOLIPASESP01DK038452 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI BROWN, DENNIS · 1987 to 2012
$20.1M
CIHR MOP 81294Intramural NIH HHSNIDDK NIH HHS DK038452NIDDK NIH HHS DK057521-08NIDDK NIH HHS DK43351NIDDK NIH HHS DK57521NIDDK NIH HHS P01 DK038452NIDDK NIH HHS P30 DK043351NIDDK NIH HHS P30 DK057521
6 · The paper itself

Abstract

Previously, we reported an acidification-dependent interaction of the endosomal vacuolar H(+)-ATPase (V-ATPase) with cytohesin-2, a GDP/GTP exchange factor (GEF), suggesting that it functions as a pH-sensing receptor. Here, we have studied the molecular mechanism of signaling between the V-ATPase, cytohesin-2, and Arf GTP-binding proteins. We found that part of the N-terminal cytosolic tail of the V-ATPase a2-subunit (a2N), corresponding to its first 17 amino acids (a2N(1-17)), potently modulates the enzymatic GDP/GTP exchange activity of cytohesin-2. Moreover, this peptide strongly inhibits GEF activity via direct interaction with the Sec7 domain of cytohesin-2. The structure of a2N(1-17) and its amino acids Phe(5), Met(10), and Gln(14) involved in interaction with Sec7 domain were determined by NMR spectroscopy analysis. In silico docking experiments revealed that part of the V-ATPase formed by its a2N(1-17) epitope competes with the switch 2 region of Arf1 and Arf6 for binding to the Sec7 domain of cytohesin-2. The amino acid sequence alignment and GEF activity studies also uncovered the conserved character of signaling between all four (a1-a4) a-subunit isoforms of mammalian V-ATPase and cytohesin-2. Moreover, the conserved character of this phenomenon was also confirmed in experiments showing binding of mammalian cytohesin-2 to the intact yeast V-ATPase holo-complex. Thus, here we have uncovered an evolutionarily conserved function of the V-ATPase as a novel cytohesin-signaling receptor.

Indexed as

ADP-Ribosylation FactorsAmino Acid SequenceAnimalsCircular DichroismDNA, ComplementaryEpitopesGTPase-Activating ProteinsGTP-Binding ProteinsGuanine Nucleotide Exchange FactorsHumansHydrogen-Ion ConcentrationMagnetic Resonance SpectroscopyMiceMicroscopy, ConfocalMolecular Sequence DataPeptidesADP-Ribosylation Factorscytohesin-2DNA, ComplementaryEpitopesGTPase-Activating ProteinsGTP-Binding ProteinsGuanine Nucleotide Exchange FactorsPeptidesProtein IsoformsRecombinant ProteinsTryptophanVacuolar Proton-Translocating ATPases

Identifiers

PMID23288846
PMCPMC3581410
OpenAlexW2167207012

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.