Evidence map›Paper›PMID 23287992›Full record

ArticleBritish journal of cancer2013

The epigenetic landscape of oral squamous cell carcinoma.

P V Jithesh, J M Risk, A G Schache, J Dhanda, B Lane, T Liloglou, R J Shaw

Open access · hybridAbstract read
In one paragraph

Article in British journal of cancer, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 101 citations in OpenAlex.

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  17. Analysis of DNA methylation of E-cadherin and p16Clinical and experimental dental research · 2021
    Article
  18. Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

P V JitheshLiverpool Cancer Research UK Centre, Department of Molecular and Clinical Cancer Medicine, Institute of Translational Medicine, Block C, Waterhouse Buildings, Brownlow Street, University of Liverpool, Liverpool L69 3GL, UK. jithesh@liv.ac.uk
J M Risk
A G Schache
J Dhanda
B Lane
T Liloglou
R J Shaw
Cancer Research UK · GBUniversity of Liverpool · GBNIHR Liverpool Pancreatic Biomedical Research Unit · GB

Funding

Cancer Research UK
6 · The paper itself

Abstract

backgroundThere is relatively little methylation array data available specifically for oral squamous cell carcinoma (OSCC). This study aims to compare the DNA methylome across a large cohort of tumour/normal pairs.

methodsDNA was extracted from 44 OSCCs and paired normal mucosa. DNA methylation analysis employed the Illumina GoldenGate high-throughput array comprising 1505 CpG loci selected from 807 epigenetically regulated genes. This data was correlated with extracapsular spread (ECS), human papilloma virus (HPV) status, recurrence and 5-year survival.

resultsDifferential methylation levels of a number of genes distinguished the tumour tissue sample from the matched normal. Putative methylation signatures for ECS and recurrence were identified. The concept of concordant methylation or CpG island methylator phenotype (CIMP) in OSCC is supported by our data, with an association between 'CIMP-high' and worse prognosis. Epigenetic deregulation of NOTCH4 signalling in OSCC was also observed, as part of a possible methylation signature for recurrence, with parallels to recently discovered NOTCH mutations in HNSCC. Differences in methylation in HPV-driven cases were seen, but are less significant than that has been recently proposed in other series.

conclusionAlthough OSCC seems as much an 'epigenetic' as a genetic disease, the translational potential of cancer epigenetics has yet to be fully exploited. This data points to the application of epigenetic biomarkers and targets available to further the development of therapy in OSCC.

Indexed as

DNA MethylationAdultAgedAged, 80 and overCarcinoma, Squamous CellCpG IslandsEpigenesis, GeneticFemaleHumansMaleMiddle AgedMouth NeoplasmsNeoplasm Recurrence, LocalPapillomavirus InfectionsPhenotypePromoter Regions, GeneticNOTCH4 protein, humanProto-Oncogene ProteinsReceptor, Notch4Receptors, NotchRNA, Messenger

Identifiers

PMID23287992
PMCPMC3566828
OpenAlexW1981980694

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.