Evidence map›Paper›PMID 23286197›Full record

ArticleBiochemistry2013

Assembly of the SLIP1-SLBP complex on histone mRNA requires heterodimerization and sequential binding of SLBP followed by SLIP1.

Nitin Bansal, Minyou Zhang, Aishwarya Bhaskar, Patrick Itotia, EunHee Lee, Lyudmila S Shlyakhtenko, TuKiet T Lam, Andrew Fritz, Ronald Berezney, Yuri L Lyubchenko and 2 more

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Nitin BansalHauptman-Woodward Medical Research Institute, 700 Ellicott Street, Buffalo, NY 14203, USA.
Minyou Zhang
Aishwarya Bhaskar
Patrick Itotia
EunHee Lee
Lyudmila S Shlyakhtenko
TuKiet T Lam
Andrew Fritz
Ronald Berezney
Yuri L Lyubchenko
Walter F Stafford
Roopa Thapar
Hauptman-Woodward Medical Research Institute · USUniversity at Buffalo, State University of New York · USBoston Biomedical Research Institute · USNebraska Medical Center · USUniversity of Nebraska Medical Center · USW. M. Keck Foundation · US

Funding

Structural Characterization of APOBECS's Atomic interactionsP01GM091743 · NIGMS · UNIVERSITY OF MINNESOTA · PI KOTLER, MOSHE · 2011 to 2015
$10.1M
Protein Self-Assembly into NanoaggregatesR01GM096039 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI LYUBCHENKO, YURI L · 2011 to 2018
$2.9M
Nuclear Matrix Structure and Genomic FunctionR01GM072131 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI BEREZNEY, RONALD · 2004 to 2007
$1.5M
Phosphorylation dependent recognition of a histone mRNA hairpin by SLBPR01GM076660 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MARZLUFF, WILLIAM F. · 2006 to 2009
$1.1M
Bioscope II - AFM system for Nanoimaging Core FacilityS10RR023400 · NCRR · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI LYUBCHENKO, YURI L · 2007 to 2007
$369k
NCRR NIH HHS S10 RR023400NIGMS NIH HHS 1P01-GM091743NIGMS NIH HHS 1R01-GM072131NIGMS NIH HHS 1R01-GM076660NIGMS NIH HHS 1R01-GM076660-04S1NIGMS NIH HHS 1R01-GM096039NIGMS NIH HHS P01 GM091743NIGMS NIH HHS R01 GM072131NIGMS NIH HHS R01 GM076660NIGMS NIH HHS R01 GM096039
6 · The paper itself

Abstract

The SLIP1-SLBP complex activates translation of replication-dependent histone mRNAs. In this report, we describe how the activity of the SLIP1-SLBP complex is modulated by phosphorylation and oligomerization. Biophysical characterization of the free proteins shows that whereas SLIP1 is a homodimer that does not bind RNA, human SLBP is an intrinsically disordered protein that is phosphorylated at 23 Ser/Thr sites when expressed in a eukaryotic expression system such as baculovirus. The bacterially expressed unphosphorylated SLIP1-SLBP complex forms a 2:2 high-affinity (K(D) < 0.9 nM) heterotetramer that is also incapable of binding histone mRNA. In contrast, phosphorylated SLBP from baculovirus has a weak affinity (K(D) ~3 μM) for SLIP1. Sequential binding of phosphorylated SLBP to the histone mRNA stem-loop motif followed by association with SLIP1 is required to form an "active" ternary complex. Phosphorylation of SLBP at Thr171 promotes dissociation of the heterotetramer to the SLIP1-SLBP heterodimer. Using alanine scanning mutagenesis, we demonstrate that the binding site on SLIP1 for SLBP lies close to the dimer interface. A single-point mutant near the SLIP1 homodimer interface abolished interaction with SLBP in vitro and reduced the abundance of histone mRNA in vivo. On the basis of these biophysical studies, we propose that oligomerization and SLBP phosphorylation may regulate the SLBP-SLIP1 complex in vivo. SLIP1 may act to sequester SLBP in vivo, protecting it from proteolytic degradation as an inactive heterotetramer, or alternatively, formation of the SLIP1-SLBP heterotetramer may facilitate removal of SLBP from the histone mRNA prior to histone mRNA degradation.

Indexed as

Carrier ProteinsHistonesHumansKineticsmRNA Cleavage and Polyadenylation FactorsMutagenesis, Site-DirectedMutant ProteinsNuclear ProteinsPeptide FragmentsPhosphorylationPoint MutationProtein BindingProtein Interaction Domains and MotifsProtein MultimerizationProtein Processing, Post-TranslationalRecombinant ProteinsCarrier ProteinsHistonesMIF4GD protein, humanmRNA Cleavage and Polyadenylation FactorsMutant ProteinsNuclear ProteinsPeptide FragmentsRecombinant ProteinsRNA-Binding ProteinsRNA, MessengerSerineSLBP protein, humanThreonineTyrosine

Identifiers

PMID23286197
PMCPMC3580866
OpenAlexW1969481184

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.