Evidence map›Paper›PMID 23285598›Full record

ArticleMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention2012

Similarity-based appearance-prior for fitting a subdivision mesh in gene expression images.

Yen H Le, Uday Kurkure, Nikos Paragios, Tao Ju, James P Carson, Ioannis A Kakadiaris

Abstract read
In one paragraph

Article in Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. A chicken embryo cardiac outflow tract atlas for registering changes due to abnormal blood flow.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yen H LeComputational Biomedicine Lab, University of Houston, Houston, TX, USA.
Uday Kurkure
Nikos Paragios
Tao Ju
James P Carson
Ioannis A Kakadiaris

Funding

An Interactive Volumetric Atlas of the Mouse BrainR21NS058553 · NINDS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI CARSON, JAMES PAUL · 2009 to 2010
$391k
NINDS NIH HHS 1R21NS058553NINDS NIH HHS R21 NS058553
6 · The paper itself

Abstract

Automated segmentation of multi-part anatomical objects in images is a challenging task. In this paper, we propose a similarity-based appearance-prior to fit a compartmental geometric atlas of the mouse brain in gene expression images. A subdivision mesh which is used to model the geometry is deformed using a Markov random field (MRF) framework. The proposed appearance-prior is computed as a function of the similarity between local patches at corresponding atlas locations from two images. In addition, we introduce a similarity-saliency score to select the mesh points that are relevant for the computation of the proposed prior. Our method significantly improves the accuracy of the atlas fitting, especially in the regions that are influenced by the selected similarity-salient points, and outperforms the previous subdivision mesh fitting methods for gene expression images.

Indexed as

AlgorithmsAnimalsArtificial IntelligenceAutomationBrainGene ExpressionGene Expression ProfilingImage Processing, Computer-AssistedImaging, Three-DimensionalMarkov ChainsMiceModels, StatisticalPattern Recognition, AutomatedReproducibility of ResultsSoftware

Identifiers

PMID23285598
PMCPMC6746418

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.