Evidence map›Paper›PMID 23285117›Full record

ArticlePloS one2012

Establishment of a TGFβ-induced post-transcriptional EMT gene signature.

George S Hussey, Laura A Link, Andrew S Brown, Breege V Howley, Arindam Chaudhury, Philip H Howe

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. Article
  3. Detection and Characterization of the Eukaryotic Vacant Ribosome.International journal of molecular sciences · 2025
    Review
  4. Article
  5. Review
  6. BDNF and its signaling in cancer.Journal of cancer research and clinical oncology · 2023
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

George S HusseyDepartment of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC, USA.
Laura A Link
Andrew S Brown
Breege V Howley
Arindam Chaudhury
Philip H Howe

Funding

TGF-regulated EMTR01CA154663 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Philip H Howe · 2011 to 2026
$5.1M
TRANSFORMING GROWTH FACTOR BETA SIGNALING PATHWAYSR01CA055536 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI HOWE, PHILIP H · 1997 to 2017
$5.0M
CELL CYLCE REGULATION OF EPITHELIAL CELL GROWTHR29CA055536 · NCI · CLEVELAND CLINIC FOUNDATION · PI HOWE, PHILIP H · 1992 to 1996
–
NCI NIH HHS CA154663NCI NIH HHS CA55536NCI NIH HHS R01 CA055536NCI NIH HHS R01 CA154663
6 · The paper itself

Abstract

A major challenge in the clinical management of human cancers is to accurately stratify patients according to risk and likelihood of a favorable response. Stratification is confounded by significant phenotypic heterogeneity in some tumor types, often without obvious criteria for subdivision. Despite intensive transcriptional array analyses, the identity and validation of cancer specific 'signature genes' remains elusive, partially because the transcriptome does not mirror the proteome. The simplification associated with transcriptomic profiling does not take into consideration changes in the relative expression among transcripts that arise due to post-transcriptional regulatory events. We have previously shown that TGFβ post-transcriptionally regulates epithelial-mesenchymal transition (EMT) by causing increased expression of two transcripts, Dab2 and ILEI, by modulating hnRNP E1 phosphorylation. Using a genome-wide combinatorial approach involving expression profiling and RIP-Chip analysis, we have identified a cohort of translationally regulated mRNAs that are induced during TGFβ-mediated EMT. Coordinated translational regulation by hnRNP E1 constitutes a post-transcriptional regulon inhibiting the expression of related EMT-facilitating genes, thus enabling the cell to rapidly and coordinately regulate multiple EMT-facilitating genes.

Indexed as

Gene Expression ProfilingAnimalsBase SequenceCluster AnalysisEpithelial-Mesenchymal TransitionGene Expression RegulationHeterogeneous-Nuclear RibonucleoproteinsMiceNucleic Acid ConformationProtein BindingProtein BiosynthesisReproducibility of ResultsResponse ElementsRNA, MessengerRNA Processing, Post-TranscriptionalTransforming Growth Factor betaHeterogeneous-Nuclear RibonucleoproteinsRNA, MessengerTransforming Growth Factor beta

Identifiers

PMID23285117
PMCPMC3527574

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.