ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2013
TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
8 citing papers in PubMed, 23 citations in OpenAlex.
- Transcription Factor-Based Genetic Engineering in Microalgae.Plants (Basel, Switzerland) · 2021Review
- Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells.Scientific reports · 2018Article
- PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants.Nucleic acids research · 2017Article
- Maize and millet transcription factors annotated using comparative genomic and transcriptomic data.BMC genomics · 2014Article
- A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue.Nature protocols · 2014Article
- PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors.Nucleic acids research · 2014Article
- Unlocking Triticeae genomics to sustainably feed the future.Plant & cell physiology · 2013Review
- The auxin response factor transcription factor family in soybean: genome-wide identification and expression analyses during development and water stress.DNA research : an international journal for rapid publication of reports on genes and genomes · 2013Article
Corrections and comments
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Authors and funding
6 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Crop plants, whose productivity is affected by a wide range of growing and environmental conditions, are grown for economic purposes. Transcription factors (TFs) play central role in regulation of many biological processes, including plant development and responses to environmental stimuli, by activating or repressing spatiotemporal gene expression. Here, we describe the TreeTFDB (http://treetfdb.bmep.riken.jp/index.pl) that houses the TF repertoires of six economically important tree crop species: Jatropha curcas, papaya, cassava, poplar, castor bean and grapevine. Among these, the TF repertoire of J. curcas has not been reported by any other TF databases. In addition to their basic information, such as sequence and domain features, domain alignments, gene ontology assignment and sequence comparison, information on available full-length cDNAs, identity and positions of all types of known cis-motifs found in the promoter regions, gene expression data are provided. With its newly designed and friendly interface and its unique features, TreeTFDB will enable research community to predict the functions and provide access to available genetic resources for performing comparative and functional genomics of the crop TFs, either individually or at whole family level, in a comprehensive and convenient manner.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.