ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2013
ChloroMitoSSRDB: open source repository of perfect and imperfect repeats in organelle genomes for evolutionary genomics.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
15 citing papers in PubMed, 29 citations in OpenAlex.
- Comparative chloroplast genomes and phylogenetic analysis of sixFrontiers in plant science · 2025Article
- pSATdb 2.0: a database of organellar common, polymorphic, and unique microsatellites.Functional & integrative genomics · 2024Article
- The Complete Chloroplast Genomes ofInternational journal of molecular sciences · 2024Article
- pSATdb: a database of mitochondrial common, polymorphic, and unique microsatellites.Life science alliance · 2022Article
- Chloroplast Genome Evolution and Species Identification ofBioMed research international · 2022Article
- Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species.Scientific reports · 2020Article
- "Mitochondrial Toolbox" - A Review of Online Resources to Explore Mitochondrial Genomics.Frontiers in genetics · 2020Review
- Complete Chloroplast Genome Sequence of Decaisnea insignis: Genome Organization, Genomic Resources and Comparative Analysis.Scientific reports · 2017Article
- Chloroplast Genome Analysis of Resurrection Tertiary RelictFrontiers in plant science · 2017Article
- PlantFuncSSR: Integrating First and Next Generation Transcriptomics for Mining of SSR-Functional Domains Markers.Frontiers in plant science · 2016Article
- Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats.BMC genomics · 2015Article
- ChloroMitoSSRDB 2.00: more genomes, more repeats, unifying SSRs search patterns and on-the-fly repeat detection.Database : the journal of biological databases and curation · 2015Article
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- ChloroSSRdb: a repository of perfect and imperfect chloroplastic simple sequence repeats (cpSSRs) of green plants.Database : the journal of biological databases and curation · 2014Article
- Article
Corrections and comments
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Authors and funding
6 authors at 5 institutions in 6 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Microsatellites or simple sequence repeats (SSRs) are repetitive stretches of nucleotides (A, T, G, C) that are distributed either as single base pair stretches or as a combination of two- to six-nucleotides units that are non-randomly distributed within coding and in non-coding regions of the genome. ChloroMitoSSRDB is a complete curated web-oriented relational database of perfect and imperfect repeats in organelle genomes. The present version of the database contains perfect and imperfect SSRs of 2161 organelle genomes (1982 mitochondrial and 179 chloroplast genomes). We detected a total of 5838 chloroplast perfect SSRs, 37 297 chloroplast imperfect SSRs, 5898 mitochondrial perfect SSRs and 50 355 mitochondrial imperfect SSRs across these genomes. The repeats have been further hyperlinked to the annotated gene regions (coding or non-coding) and a link to the corresponding gene record in National Center for Biotechnology Information(www.ncbi.nlm.nih.gov/) to identify and understand the positional relationship of the repetitive tracts. ChloroMitoSSRDB is connected to a user-friendly web interface that provides useful information associated with the location of the repeats (coding and non-coding), size of repeat, motif and length polymorphism, etc. ChloroMitoSSRDB will serve as a repository for developing functional markers for molecular phylogenetics, estimating molecular variation across species. Database URL: ChloroMitoSSRDB can be accessed as an open source repository at www.mcr.org.in/chloromitossrdb.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.