Evidence map›Paper›PMID 23283723›Full record

ArticleCirculation research2013

Trapping cardiac recessive mutants via expression-based insertional mutagenesis screening.

Yonghe Ding, Weibin Liu, Yun Deng, Beninio Jomok, Jingchun Yang, Wei Huang, Karl J Clark, Tao P Zhong, Xueying Lin, Stephen C Ekker and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Circulation research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
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  10. TFEB Overexpression, Not mTOR Inhibition, Ameliorates RagCInternational journal of molecular sciences · 2021
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  12. Disruption ofBioMed research international · 2021
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  15. Cell stemness is maintained upon concurrent expression of RB and the mitochondrial ribosomal protein S18-2.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Article
  17. Review
  18. Article
  19. Phenotyping cardiomyopathy in adult zebrafish.Progress in biophysics and molecular biology · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Yonghe DingDepartment of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.
Weibin Liu
Yun Deng
Beninio Jomok
Jingchun Yang
Wei Huang
Karl J Clark
Tao P Zhong
Xueying Lin
Stephen C Ekker
Xiaolei Xu
Johns Hopkins Medicine · USHunan Normal University · CNJohns Hopkins University · US

Funding

Systematic Vertebrate Functional GenomicsR01GM063904 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI EKKER, STEPHEN CARL · 2001 to 2025
$10.7M
Genetic Studies of Sarcomere-based Cardiac Diseases (Diversity Supplement)R01HL081753 · NHLBI · MAYO CLINIC ROCHESTER · PI XU, XIAOLEI · 2005 to 2025
$7.8M
Epicardial remodeling in cardiomyopathy and cardiac agingR01HL107304 · NHLBI · MAYO CLINIC ROCHESTER · PI Xiaolei Xu · 2011 to 2026
$6.6M
Intron-based Mutagenic Transposons for ZebrafishR01DA014546 · NIDA · UNIVERSITY OF MINNESOTA TWIN CITIES · PI EKKER, STEPHEN CARL · 2001 to 2011
$3.5M
International Zebrafish Mutagenic Protein TrapR01HG006431 · NHGRI · MAYO CLINIC ROCHESTER · PI EKKER, STEPHEN CARL · 2011 to 2016
$3.3M
Systematic Vertebrate Functional GenomicsR56GM063904 · NIGMS · MAYO CLINIC ROCHESTER · PI EKKER, STEPHEN CARL · 2009 to 2010
$611k
NHGRI NIH HHS HG006431NHGRI NIH HHS R01 HG006431NHLBI NIH HHS HL107304NHLBI NIH HHS R01 HL081753NHLBI NIH HHS R01 HL107304NIDA NIH HHS DA14546NIDA NIH HHS R01 DA014546NIGMS NIH HHS GM63904NIGMS NIH HHS R01 GM063904NIGMS NIH HHS R56 GM063904
6 · The paper itself

Abstract

rationaleMutagenesis screening is a powerful genetic tool for probing biological mechanisms underlying vertebrate development and human diseases. However, the increased colony management efforts in vertebrates impose a significant challenge for identifying genes affecting a particular organ, such as the heart, especially those exhibiting adult phenotypes on depletion.

objectiveWe aim to develop a facile approach that streamlines colony management efforts via enriching cardiac mutants, which enables us to screen for adult phenotypes. METHODS AND

resultsThe transparency of the zebrafish embryos enabled us to score 67 stable transgenic lines generated from an insertional mutagenesis screen using a transposon-based protein trapping vector. Fifteen lines with cardiac monomeric red fluorescent protein reporter expression were identified. We defined the molecular nature for 10 lines and bred them to homozygosity, which led to the identification of 1 embryonic lethal, 1 larval lethal, and 1 adult recessive mutant exhibiting cardiac hypertrophy at 1 year of age. Further characterization of these mutants uncovered an essential function of methionine adenosyltransferase II, α a (mat2aa) in cardiogenesis, an essential function of mitochondrial ribosomal protein S18B (mrps18b) in cardiac mitochondrial homeostasis, as well as a function of DnaJ (Hsp40) homolog, subfamily B, member 6b (dnajb6b) in adult cardiac hypertrophy.

conclusionsWe demonstrate that transposon-based gene trapping is an efficient approach for identifying both embryonic and adult recessive mutants with cardiac expression. The generation of a zebrafish insertional cardiac mutant collection shall facilitate the annotation of a vertebrate cardiac genome, as well as enable heart-based adult screens.

Indexed as

Gene Expression ProfilingGenes, RecessiveMutagenesis, InsertionalAnimalsAnimals, Genetically ModifiedBreedingCardiomegalyDNA Transposable ElementsEmbryo, NonmammalianGene Expression Regulation, DevelopmentalGene Knockdown TechniquesGenes, LethalGenes, ReporterGenetic TestingGenetic VectorsGenotypeDNA Transposable ElementsLuminescent ProteinsRed Fluorescent ProteinZebrafish Proteins

Identifiers

PMID23283723
PMCPMC3603352
OpenAlexW2112779993

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.