Evidence map›Paper›PMID 23283236›Full record

ArticleBiophysical journal2012

Quantitative analysis of approaches to measure cooperative phosphate release in polymerized actin.

Mark M Burnett, Anders E Carlsson

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Automatic extraction of actin networks in plants.PLoS computational biology · 2023
    Article
  2. Review
  3. Article
  4. Article
  5. On phosphate release in actin filaments.Biophysical journal · 2013
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Mark M BurnettDepartment of Physics, Washington University, St. Louis, MO, USA. mark.m.burnett@gmail.com
Anders E Carlsson
Washington University in St. Louis · US

Funding

Control of Actin Assembly and Cell Migration by Actin-Regulating ProteinsR01GM086882 · NIGMS · WASHINGTON UNIVERSITY · PI CARLSSON, ANDERS E · 2008 to 2011
$1.0M
NIGMS NIH HHS R01 GM086882NIGMS NIH HHS R01-GM086882
6 · The paper itself

Abstract

We use stochastic simulations that treat several experimental probes of actin dynamics to explore the extent to which phosphate dissociation in filamentous actin may be cooperative. Phosphate time-courses from polymerization and copolymerization experiments of ATP- and ADP-actin are studied, including the effects of variations in filament-number concentration as well as single-filament depolymerization time-courses. We find that highly cooperative models are consistent with the treated experimental data. We also find that some types of experiments that are believed to provide strong constraints on the cooperativity of actin hydrolysis models do not provide such constraints.

Indexed as

AlgorithmsModels, ChemicalModels, MolecularActinsComputer SimulationDimerizationPhosphatesProtein BindingActinsPhosphates

Identifiers

PMID23283236
PMCPMC3514521
OpenAlexW2072034848

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.