Evidence map›Paper›PMID 23283235›Full record

ArticleBiophysical journal2012

The molecular mechanism underlying mechanical anisotropy of the protein GB1.

Yongnan Devin Li, Guillaume Lamour, Jörg Gsponer, Peng Zheng, Hongbin Li

Abstract read
In one paragraph

Article in Biophysical journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Contribution of hydrophobic interactions to protein mechanical stability.Computational and structural biotechnology journal · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Nucleotides regulate the mechanical hierarchy between subdomains of the nucleotide binding domain of the Hsp70 chaperone DnaK.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  12. Polyproteins in structural biology.Current opinion in structural biology · 2015
    Review
  13. Force-induced remodelling of proteins and their complexes.Current opinion in structural biology · 2015
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yongnan Devin LiDepartment of Chemistry, University of British Columbia, Vancouver, British Columbia, Canada.
Guillaume Lamour
Jörg Gsponer
Peng Zheng
Hongbin Li

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mechanical responses of elastic proteins are crucial for their biological function and nanotechnological use. Loading direction has been identified as one key determinant for the mechanical responses of proteins. However, it is not clear how a change in pulling direction changes the mechanical unfolding mechanism of the protein. Here, we combine protein engineering, single-molecule force spectroscopy, and steered molecular dynamics simulations to systematically investigate the mechanical response of a small globular protein GB1. Force versus extension profiles from both experiments and simulations reveal marked mechanical anisotropy of GB1. Using native contact analysis, we relate the mechanically robust shearing geometry with concurrent rupture of native contacts. This clearly contrasts the sequential rupture observed in simulations for the mechanically labile peeling geometry. Moreover, we identify multiple distinct mechanical unfolding pathways in two loading directions. Implications of such diverse unfolding mechanisms are discussed. Our results may also provide some insights for designing elastomeric proteins with tailored mechanical properties.

Indexed as

Models, ChemicalModels, MolecularAnisotropyBacterial ProteinsComputer SimulationElastic ModulusProtein ConformationProtein Structure, TertiaryStress, MechanicalStructure-Activity RelationshipBacterial ProteinsIgG Fc-binding protein, Streptococcus

Identifiers

PMID23283235
PMCPMC3514518

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.