Evidence map›Paper›PMID 23280837›Full record

ArticleAnnals of neurology2012

Mutations in KCND3 cause spinocerebellar ataxia type 22.

Yi-Chung Lee, Alexandra Durr, Karen Majczenko, Yen-Hua Huang, Yu-Chao Liu, Cheng-Chang Lien, Pei-Chien Tsai, Yaeko Ichikawa, Jun Goto, Marie-Lorraine Monin and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Annals of neurology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed, 1 pooled it
6.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 1 synthesis or guideline pooled it, 151 citations in OpenAlex.

  1. Pooled it
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  4. Review
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  14. An E280K Missense Variant inInternational journal of molecular sciences · 2023
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  19. A Second Case With the V374ANeurology. Genetics · 2022
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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 4 countries.

Yi-Chung LeeDepartment of Neurology, National Yang-Ming University School of Medicine, Taipei, Taiwan; Brain Research Center, National Yang-Ming University, Taipei, Taiwan.
Alexandra Durr
Karen Majczenko
Yen-Hua Huang
Yu-Chao Liu
Cheng-Chang Lien
Pei-Chien Tsai
Yaeko Ichikawa
Jun Goto
Marie-Lorraine Monin
Jun Z Li
Ming-Yi Chung
Emeline Mundwiller
Vikram Shakkottai
Tze-Tze Liu
Christelle Tesson
Yi-Chun Lu
Alexis Brice
Shoji Tsuji
Margit Burmeister
Giovanni Stevanin
Bing-Wen Soong
National Yang Ming Chiao Tung University · TWSorbonne Université · FRThe University of Tokyo · JPUniversity of Michigan · USTaipei Veterans General Hospital · TW

Funding

Ataxia gene identification by integrated genomic analysisR01NS078560 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BURMEISTER, MARGIT, LI, JUN · 2012 to 2015
$2.1M
Comprehensive genomic approach to rare hearing disorders and ataxiaR21DC010074 · NIDCD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BURMEISTER, MARGIT · 2009 to 2010
$538k
NIDCD NIH HHS R21 DC010074NINDS NIH HHS R01 NS078560
6 · The paper itself

Abstract

objectiveTo identify the causative gene in spinocerebellar ataxia (SCA) 22, an autosomal dominant cerebellar ataxia mapped to chromosome 1p21-q23.

methodsWe previously characterized a large Chinese family with progressive ataxia designated SCA22, which overlaps with the locus of SCA19. The disease locus in a French family and an Ashkenazi Jewish American family was also mapped to this region. Members from all 3 families were enrolled. Whole exome sequencing was performed to identify candidate mutations, which were narrowed by linkage analysis and confirmed by Sanger sequencing and cosegregation analyses. Mutational analyses were also performed in 105 Chinese and 55 Japanese families with cerebellar ataxia. Mutant gene products were examined in a heterologous expression system to address the changes in protein localization and electrophysiological functions.

resultsWe identified heterozygous mutations in the voltage-gated potassium channel Kv4.3-encoding gene KCND3: an in-frame 3-nucleotide deletion c.679_681delTTC p.F227del in both the Chinese and French pedigrees, and a missense mutation c.1034G>T p.G345V in the Ashkenazi Jewish family. Direct sequencing of KCND3 further identified 3 mutations, c.1034G>T p.G345V, c.1013T>C p.V338E, and c.1130C>T p.T377M, in 3 Japanese kindreds. Immunofluorescence analyses revealed that the mutant p.F227del Kv4.3 subunits were retained in the cytoplasm, consistent with the lack of A-type K(+) channel conductance in whole cell patch-clamp recordings.

interpretationOur data identify the cause of SCA19/22 in patients of diverse ethnic origins as mutations in KCND3. These findings further emphasize the important role of ion channels as key regulators of neuronal excitability in the pathogenesis of cerebellar degeneration.

Indexed as

AdolescentAdultAsian PeopleChromosomes, Human, Pair 1DNA Mutational AnalysisFamily HealthFemaleGenetic LinkageGenetic Predisposition to DiseaseGreen Fluorescent ProteinsHEK293 CellsHumansMaleMembrane PotentialsMiddle AgedMutationGreen Fluorescent ProteinsKCND3 protein, humanShal Potassium Channels

Identifiers

PMID23280837
PMCPMC4085146
OpenAlexW2128172976

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.