Evidence map›Paper›PMID 23279857›Full record

ReviewMicrobial biotechnology2013

Xenomic networks variability and adaptation traits in wood decaying fungi.

Mélanie Morel, Edgar Meux, Yann Mathieu, Anne Thuillier, Kamel Chibani, Luc Harvengt, Jean-Pierre Jacquot, Eric Gelhaye

Abstract readReview
In one paragraph

Review in Microbial biotechnology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Article
  2. Mechanisms of the marine yeastApplied and environmental microbiology · 2026
    Article
  3. Integrative Genomic and Transcriptomic Analysis of White-Rot FungiJournal of fungi (Basel, Switzerland) · 2026
    Article
  4. Review
  5. Overlooked and misunderstood: can glutathione conjugates be clues to understanding plant glutathione transferases?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  6. Whole Genome Identification and Biochemical Characteristics of theInternational journal of molecular sciences · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Qualitative metabolomics-based characterization of a phenolic UDP-xylosyltransferase with a broad substrate spectrum fromProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Review
  15. Wood Degradation byJournal of fungi (Basel, Switzerland) · 2023
    Article
  16. Comparative analysis of simulatedFrontiers in microbiology · 2023
    Article
  17. Journal of fungi (Basel, Switzerland) · 2022
    Article
  18. Wood degradation byFrontiers in plant science · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mélanie MorelUniversité de Lorraine, IAM, UMR 1136, IFR 110 EFABA, Vandoeuvre-lès-Nancy, F-54506, France. mmorel@scbiol.uhp-nancy.fr
Edgar Meux
Yann Mathieu
Anne Thuillier
Kamel Chibani
Luc Harvengt
Jean-Pierre Jacquot
Eric Gelhaye

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fungal degradation of wood is mainly restricted to basidiomycetes, these organisms having developed complex oxidative and hydrolytic enzymatic systems. Besides these systems, wood-decaying fungi possess intracellular networks allowing them to deal with the myriad of potential toxic compounds resulting at least in part from wood degradation but also more generally from recalcitrant organic matter degradation. The members of the detoxification pathways constitute the xenome. Generally, they belong to multigenic families such as the cytochrome P450 monooxygenases and the glutathione transferases. Taking advantage of the recent release of numerous genomes of basidiomycetes, we show here that these multigenic families are extended and functionally related in wood-decaying fungi. Furthermore, we postulate that these rapidly evolving multigenic families could reflect the adaptation of these fungi to the diversity of their substrate and provide keys to understand their ecology. This is of particular importance for white biotechnology, this xenome being a putative target for improving degradation properties of these fungi in biomass valorization purposes.

Indexed as

Adaptation, PhysiologicalBasidiomycotaBiodegradation, EnvironmentalCytochrome P-450 Enzyme SystemFungal ProteinsGenome, FungalGlutathione TransferaseMetabolic Networks and PathwaysWoodXenobioticsCytochrome P-450 Enzyme SystemFungal ProteinsGlutathione TransferaseXenobiotics

Identifiers

PMID23279857
PMCPMC3815920

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.