Evidence map›Paper›PMID 23277564›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Solubility-based genetic screen identifies RING finger protein 126 as an E3 ligase for activation-induced cytidine deaminase.

Rebecca K Delker, Yanjiao Zhou, Alexandros Strikoudis, C Erec Stebbins, F Nina Papavasiliou

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Insights on SNPs of Human Activation-Induced Cytidine Deaminase AID.International journal of molecular sciences · 2025
    Review
  5. Article
  6. E3 ubiquitin ligases in nasopharyngeal carcinoma and implications for therapies.Journal of molecular medicine (Berlin, Germany) · 2023
    Article
  7. Article
  8. Article
  9. High Expression of RING Finger Protein 126 Predicts Unfavorable Prognosis of Epithelial Ovarian Cancer.Medical science monitor : international medical journal of experimental and clinical research · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. RNF126 Quenches RNF168 Function in the DNA Damage Response.Genomics, proteomics & bioinformatics · 2018
    Article
  14. RNF126 as a Biomarker of a Poor Prognosis in Invasive Breast Cancer and CHEK1 Inhibitor Efficacy in Breast Cancer Cells.Clinical cancer research : an official journal of the American Association for Cancer Research · 2018
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Rebecca K DelkerLaboratories of Lymphocyte Biology, The Rockefeller University, New York, NY 10065, USA. rdelker@rockefeller.edu
Yanjiao Zhou
Alexandros Strikoudis
C Erec Stebbins
F Nina Papavasiliou
Rockefeller University · US

Funding

A novel method to identify interacting partners of insoluble proteinsR21AI082329 · NIAID · ROCKEFELLER UNIVERSITY · PI PAPAVASILIOU, F. NINA · 2009 to 2010
$462k
NIAID NIH HHS R21 AI082329
6 · The paper itself

Abstract

Protein-protein interactions are typically identified by either biochemical purification coupled to mass spectrometry or genetic approaches exemplified by the yeast two-hybrid assay; however, neither assay works well for the identification of cofactors for poorly soluble proteins. Solubility of a poorly soluble protein is thought to increase upon cofactor binding, possibly by masking otherwise exposed hydrophobic domains. We have exploited this notion to develop a high-throughput genetic screen to identify interacting partners of an insoluble protein fused to chloramphenicol acetyltransferase by monitoring the survival of bacteria in the presence of a drug. In addition to presenting proof-of-principle experiments, we apply this screen to activation-induced cytidine deaminase (AID), a poorly soluble protein that is essential for antibody diversification. We identify a unique cofactor, RING finger protein 126 (RNF126), verify its interaction by traditional techniques, and show that it has functional consequences as RNF126 is able to ubiquitylate AID. Our results underpin the value of this screening technique and suggest a unique form of AID regulation involving RNF126 and ubiquitylation.

Indexed as

AICDA (Activation-Induced Cytidine Deaminase)Amino Acid SequenceAnimalsB-LymphocytesConserved SequenceCytidine DeaminaseHEK293 CellsHigh-Throughput Screening AssaysHumansMiceMice, Inbred C57BLMice, KnockoutMolecular Sequence DataProtein Interaction Domains and MotifsRecombinant ProteinsRING Finger DomainsAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseRecombinant ProteinsRNF126 protein, humanUbiquitin-Protein Ligases

Identifiers

PMID23277564
PMCPMC3549133
OpenAlexW2062973054

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.