Evidence map›Paper›PMID 23277543›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Long-range protein-water dynamics in hyperactive insect antifreeze proteins.

Konrad Meister, Simon Ebbinghaus, Yao Xu, John G Duman, Arthur DeVries, Martin Gruebele, David M Leitner, Martina Havenith

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
18.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 250 citations in OpenAlex.

  1. Article
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  8. De novo designed ice-binding proteins from twist-constrained helices.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
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  11. Implementation of Telescoping Boxes in Adaptive Steered Molecular Dynamics.Journal of chemical theory and computation · 2022
    Article
  12. Article
  13. Article
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  15. Review
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  20. Locating and Navigating Energy Transport Networks in Proteins.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Konrad MeisterLehrstuhl für Physikalische Chemie II, Ruhr Universität, 44801 Bochum, Germany.
Simon Ebbinghaus
Yao Xu
John G Duman
Arthur DeVries
Martin Gruebele
David M Leitner
Martina Havenith
Ruhr University Bochum · DEUniversity of Illinois Urbana-Champaign · USUniversity of Nevada, Reno · USUniversity of Notre Dame · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Antifreeze proteins (AFPs) are specific proteins that are able to lower the freezing point of aqueous solutions relative to the melting point. Hyperactive AFPs, identified in insects, have an especially high ability to depress the freezing point by far exceeding the abilities of other AFPs. In previous studies, we postulated that the activity of AFPs can be attributed to two distinct molecular mechanisms: (i) short-range direct interaction of the protein surface with the growing ice face and (ii) long-range interaction by protein-induced water dynamics extending up to 20 Å from the protein surface. In the present paper, we combine terahertz spectroscopy and molecular simulations to prove that long-range protein-water interactions make essential contributions to the high antifreeze activity of insect AFPs from the beetle Dendroides canadensis. We also support our hypothesis by studying the effect of the addition of the osmolyte sodium citrate.

Indexed as

Protein Structure, SecondaryAnimalsAntifreeze ProteinsCitratesColeopteraComputer SimulationInsect ProteinsKineticsModels, ChemicalModels, MolecularMutationProtein BindingSodium CitrateSpectrum AnalysisThermodynamicsTime FactorsAntifreeze ProteinsCitratesInsect ProteinsSodium CitrateWater

Identifiers

PMID23277543
PMCPMC3562781
OpenAlexW2117957872

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.