Evidence map›Paper›PMID 23277452›Full record

ArticleThe Journal of experimental medicine2013

Serum proteomics reveals systemic dysregulation of innate immunity in type 1 diabetes.

Qibin Zhang, Thomas L Fillmore, Athena A Schepmoes, Therese R W Clauss, Marina A Gritsenko, Patricia W Mueller, Marian Rewers, Mark A Atkinson, Richard D Smith, Thomas O Metz

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 2 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 2 syntheses or guidelines pooled it, 101 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Qibin ZhangBiological Sciences Division and the 2 Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA. qibin.zhang@pnnl.gov
Thomas L Fillmore
Athena A Schepmoes
Therese R W Clauss
Marina A Gritsenko
Patricia W Mueller
Marian Rewers
Mark A Atkinson
Richard D Smith
Thomas O Metz
Department of Biological Sciences · RUPacific Northwest National Laboratory · USCenters for Disease Control and Prevention · USEnvironmental Molecular Sciences Laboratory · USUniversity of Colorado Denver · USUniversity of Florida · US

Funding

WORKSHOP AND TRAINING ACTIVITIESP41RR018522 · NCRR · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI BELOV, MIKHAIL · 2003 to 2011
$25.1M
Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
UCHSC DIABETES ENDOCRINOLOGY RESEARCH CENTERP30DK057516 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI HUTTON, JOHN C · 2000 to 2010
$14.0M
Natural History of Pre-Diabetic Autoimmunity (DAISY)R01DK032493 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI REWERS, MARIAN J · 1986 to 2024
$9.3M
Multiple Autoantigens/Multiple Epitopes of Type 1DMR01DK032083 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI MICHELS, AARON W · 1986 to 2025
$6.9M
Proteomics and Metabolomics Studies of Type 1 DiabetesR33DK070146 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2006 to 2008
$1.9M
Proteomics and Metabolomics Studies of Type 1 DiabetesR21DK070146 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2004 to 2004
$317k
MULTIPLE AUTOANTIGENS OF PRETYPE I DMR37DK032083 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI EISENBARTH, GEORGE S · 1992 to 1999
–
NCRR NIH HHS P41 RR018522NCRR NIH HHS P41RR018522NIDDK NIH HHS DK070146NIDDK NIH HHS DK32083NIDDK NIH HHS P30 DK057516NIDDK NIH HHS P30 DK57516NIDDK NIH HHS R01 DK032083NIDDK NIH HHS R01 DK032493NIDDK NIH HHS R21 DK070146NIDDK NIH HHS R33 DK070146NIDDK NIH HHS R37 DK032083NIGMS NIH HHS P41 GM103493NIGMS NIH HHS P41GM103493
6 · The paper itself

Abstract

Using global liquid chromatography-mass spectrometry (LC-MS)-based proteomics analyses, we identified 24 serum proteins that were significantly variant between those with type 1 diabetes (T1D) and healthy controls. Functionally, these proteins represent innate immune responses, the activation cascade of complement, inflammatory responses, and blood coagulation. Targeted verification analyses were performed on 52 surrogate peptides representing these proteins, with serum samples from an antibody standardization program cohort of 100 healthy control and 50 type 1 diabetic subjects. 16 peptides were verified as having very good discriminating power, with areas under the receiver operating characteristic curve ≥ 0.8. Further validation with blinded serum samples from an independent cohort (10 healthy control and 10 type 1 diabetics) demonstrated that peptides from platelet basic protein and C1 inhibitor achieved both 100% sensitivity and 100% specificity for classification of samples. The disease specificity of these proteins was assessed using sera from 50 age-matched type 2 diabetic individuals, and a subset of proteins, C1 inhibitor in particular, were exceptionally good discriminators between these two forms of diabetes. The panel of biomarkers distinguishing those with T1D from healthy controls and those with type 2 diabetes suggests that dysregulated innate immune responses may be associated with the development of this disorder.

Indexed as

Immunity, InnateAmino Acid SequenceBiomarkersBlood ProteinsCase-Control StudiesChromatography, LiquidComplement C1 Inactivator ProteinsComplement C1 Inhibitor ProteinDiabetes Mellitus, Type 1Diabetes Mellitus, Type 2HumansHyperglycemiaMass SpectrometryMolecular Sequence DataPredictive Value of TestsProteomicsBiomarkersBlood ProteinsComplement C1 Inactivator ProteinsComplement C1 Inhibitor ProteinSERPING1 protein, human

Identifiers

PMID23277452
PMCPMC3549705
OpenAlexW2124400068

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.