Evidence map›Paper›PMID 23277165›Full record

ArticlePlanta2013

HVP10 encoding V-PPase is a prime candidate for the barley HvNax3 sodium exclusion gene: evidence from fine mapping and expression analysis.

Yuri Shavrukov, Jessica Bovill, Irfan Afzal, Julie E Hayes, Stuart J Roy, Mark Tester, Nicholas C Collins

Abstract read
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In one paragraph

Article in Planta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. HvNCX, a prime candidate gene for the novel qualitative locus qS7.1 associated with salinity tolerance in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  5. Genetic networks underlying salinity tolerance in wheat uncovered with genome-wide analyses and selective sweeps.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  6. Article
  7. Article
  8. Expression of Specific Alleles of Zinc-Finger Transcription Factors,International journal of molecular sciences · 2021
    Article
  9. Article
  10. Article
  11. International journal of molecular sciences · 2020
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Intracellular Vesicle Trafficking Genes,Frontiers in genetics · 2019
    Article
  17. The General Transcription RepressorFrontiers in genetics · 2019
    Article
  18. Mapping of novel salt tolerance QTL in an Excalibur × Kukri doubled haploid wheat population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuri ShavrukovAustralian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Urrbrae, SA, 5064, Australia. yuri.shavrukov@acpfg.com.au
Jessica Bovill
Irfan Afzal
Julie E Hayes
Stuart J Roy
Mark Tester
Nicholas C Collins

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In cereals, a common salinity tolerance mechanism is to limit accumulation of Na(+) in the shoot. In a cross between the barley variety Barque-73 (Hordeum vulgare ssp. vulgare) and the accession CPI-71284 of wild barley (H. vulgare ssp. spontaneum), the HvNax3 locus on chromosome 7H was found to determine a ~10-25 % difference in leaf Na(+) accumulation in seedlings grown in saline hydroponics, with the beneficial exclusion trait originating from the wild parent. The Na(+) exclusion allele was also associated with a 13-21 % increase in shoot fresh weight. The HvNax3 locus was delimited to a 0.4 cM genetic interval, where it cosegregated with the HVP10 gene for vacuolar H(+)-pyrophosphatase (V-PPase). Sequencing revealed that the mapping parents encoded identical HVP10 proteins, but salinity-induced mRNA expression of HVP10 was higher in CPI-71284 than in Barque-73, in both roots and shoots. By contrast, the expression of several other genes predicted by comparative mapping to be located in the HvNax3 interval was similar in the two parent lines. Previous work demonstrated roles for V-PPase in ion transport and salinity tolerance. We therefore considered transcription levels of HVP10 to be a possible basis for variation in shoot Na(+) accumulation and biomass production controlled by the HvNax3 locus under saline conditions. Potential mechanisms linking HVP10 expression patterns to the observed phenotypes are discussed.

Indexed as

Chromosome MappingChromosomes, PlantGenome, PlantHordeumInorganic PyrophosphatasePlant ProteinsRNA, MessengerSalt ToleranceSequence Analysis, DNAInorganic PyrophosphatasePlant ProteinsRNA, Messenger

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.