Evidence map›Paper›PMID 23276256›Full record

ArticleMolecular cytogenetics2013

A specific family of interspersed repeats (SINEs) facilitates meiotic synapsis in mammals.

Matthew E Johnson, Ross A Rowsey, Sofia Shirley, Catherine Vandevoort, Jeffrey Bailey, Terry Hassold

Open access · goldAbstract read
In one paragraph

Article in Molecular cytogenetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Mapping separase-mediated cleavage in situ.NAR genomics and bioinformatics · 2022
    Article
  4. Chromosome Organization in Early Meiotic Prophase.Frontiers in cell and developmental biology · 2021
    Review
  5. Article
  6. Transposable elements: genome innovation, chromosome diversity, and centromere conflict.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2018
    Review
  7. Dissociation of the X chromosome from the synaptonemal complex in the XY body of the rodent Galea musteloides.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Matthew E JohnsonWashington State University, School of Molecular Biosciences and Center for Reproductive Biology, Biotechnology-Life Science Building, 1715 NE Fairway Road, Pullman, WA 99164, USA. terryhassold@vetmed.wsu.edu.
Ross A Rowsey
Sofia Shirley
Catherine Vandevoort
Jeffrey Bailey
Terry Hassold
Washington State University · USUniversity of California, Davis · USUniversity of Massachusetts Chan Medical School · US

Funding

A Program of Research in Population CytogeneticsR37HD021341 · NICHD · WASHINGTON STATE UNIVERSITY · PI HASSOLD, TERRY J · 2010 to 2019
$5.8M
NICHD NIH HHS R37 HD021341
6 · The paper itself

Abstract

unlabelled

backgroundErrors during meiosis that affect synapsis and recombination between homologous chromosomes contribute to aneuploidy and infertility in humans. Despite the clinical relevance of these defects, we know very little about the mechanisms by which homologous chromosomes interact with one another during mammalian meiotic prophase. Further, we remain ignorant of the way in which chromosomal DNA complexes with the meiosis-specific structure that tethers homologs, the synaptonemal complex (SC), and whether specific DNA elements are necessary for this interaction.

resultsIn the present study we utilized chromatin immunoprecipitation (ChIP) and DNA sequencing to demonstrate that the axial elements of the mammalian SC are markedly enriched for a specific family of interspersed repeats, short interspersed elements (SINEs). Further, we refine the role of the repeats to specific sub-families of SINEs, B1 in mouse and AluY in old world monkey (Macaca mulatta).

conclusionsBecause B1 and AluY elements are the most actively retrotransposing SINEs in mice and rhesus monkeys, respectively, our observations imply that they may serve a dual function in axial element binding; i.e., as the anchoring point for the SC but possibly also as a suppressor/regulator of retrotransposition.

Identifiers

PMID23276256
PMCPMC3545902
OpenAlexW2155448244

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.